MS02a01
Primer features | |||||
Name | Sequence | Length | Tm | ||
MS02a01.F | CTCCTACATTGACATTGCAT | 20 nt | 54.3 °C | ||
MS02a01.R | TAGACATTTGATGAGACTG | 19 nt | 50.9 °C | ||
SSR info | |||||
SSR repeat type | imperfect | ||||
Locus type | single locus | ||||
Detected loci | |||||
Alleles size range | 170-194 | ||||
Number of alleles detected | 6 | ||||
Expected heterozygosity | 0.79 | ||||
PCR annealing temp | 56 | ||||
Sequenced allele size | 200 | ||||
Linkage group(s) | |||||
Developed by | Warwick HRI | ||||
Other maps | Fiesta-10 Prima-10 Discovery-10 Fiesta-10 Fiesta-10 Fiesta x Totem-10 Apple Integrated Map-10 M.27 x M.116-10 | ||||
Reference publication | Liebhard, R. Gianfranceschi, L. Koller, B. Ryder, C. D. Tarchini, R. Weg, E. van de Gessler, C. (2002) Development and characterization of 140 new microsatellites in apple (Malus x domestica Borkh.). Molecular Breeding 10(4): 217-241 | ||||
Remarks | |||||
Sequence | |||||
>gi|58003349|gb|AY861470.1| Malus x domestica clone MS02A01 microsatellite sequence CAGCTGTGCATCAAATATATAATGTATATGCAGGTCTTCTCCTACATTGACATTGCATTCTCAAAGTTCC TTATAACGTNTATACATACATACATACATACATACATACATACATACATACACACCTACACACACACACA CACACACACACACACACACACACACACACATTCAAAACTAGTCTTGCAAAAGATAGCTAGCTAGCACAAA ATTCCCAGTCTCATCAAATGTTTATATGCCATGATTTGTGCAAGCCAAGCATGTATGGTATGTCCGCAAG ATTTTGTCTANAAGCTTAATAGCAGAACATGTATCTGGACAAATTTTAAAGTTTGTGCAAGTCAGTCCAC GCGTGGACTAACCTGTGAGTGGGTCTTATCATTGTCACGTATATGTGTGTGCGTGTGTGTGTGTGTGTGT GANCTCCCCGACAATGCCTTTANTACTAANAGTGGCATGTCATGTNTAGCTTNACAAATANACTTTTCGT ATACTTTATGTTTNTAANATNATTGTGANCATAAATTGTGGCACGANATACTTGTGTTTTATCTGCTATC ATCGCATGTTGGCACGGTGTCCTTAATTATT | |||||
User's notes | |||||
LucaG (luca.gianfranceschi@unimi.it) Date 13 February 2006 - Time: 15:02 Sequence Title: Malus x domestica clone MS02A01 microsatellite sequence. Type: DNA Length: 591 bp Organism: Malus x domestica GenBank Accession: AY861470 Cultivar: Fiesta syn. Red Pippin View Sequence Info at PlantGDB | |||||
Allele size and gel image | |||||
Cultivar | Allele size | ||||
Not available |
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