AU223670-SSR
Primer features | |||||
Name | Sequence | Length | Tm | ||
AU223670-SSR.F | GGACTCAATGCCTTTTCTGG | 20 nt | 58.4 °C | ||
AU223670-SSR.R | AGGATGGCAGCAATCTTGAA | 20 nt | 56.4 °C | ||
SSR info | |||||
SSR repeat type | Perfect | ||||
Locus type | presumed multi-locus | ||||
Detected loci | |||||
Alleles size range | 194-202 | ||||
Number of alleles detected | 3 | ||||
Expected heterozygosity | n.d. | ||||
PCR annealing temp | 60 | ||||
Sequenced allele size | 0 | ||||
Linkage group(s) | |||||
Developed by | HiDRAS consortium | ||||
Other maps | Discovery-5 | ||||
Reference publication | Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224 | ||||
Remarks | extra bands | ||||
Sequence | |||||
>gi|15184694|gb|AU223670.1|AU223670 AU223670 Apple shoot cDNA library Malus x domestica cDNA clone S0086, mRNA sequence CAAGAGGAGGATGTCATCAGCAAACAACGTGACTTACCTAACAGGACTCAATGCCTTTTCTGGACTCAAA GCTCAGAGCAGTGTGGCCTCCCTTGGCCTCCCACGGACTACTGAGCAGTCCTTTGCTAGGGTTGTGAGCT CCTTGAGATCCCCATCAAAGGGCAACGGAAGTGGTGGTGGTGGTGGTGCACTGTCGTCCACCTGCAATGC TGTTGGTGAGATTTTCAAGATTGCTGCCATCCTCAATGGANTCACTCTCGTCGGAGTTGCGGTTGGATTC GTGCTTCTTCGCATCGAAGCCGCGGTTGAGGAGGCAGCTGANGCTGAGTAACAAGAGTTTTCAGATGCCT TCTTAATTAGG | |||||
User's notes | |||||
LucaG (luca.gianfranceschi@unimi.it) Date 13 February 2006 - Time: 09:59 Sequence Library View Sequence Info at PlantGDB | |||||
Allele size and gel image | |||||
Cultivar | Allele size | ||||
Fiesta Discovery Gala Florina Nova Easygro TN10-8 Durello di Forli Prima Modial Gala Fuji |
194:202 194:196:202 194:196:202 194:196:202 194:196:202 194:202 194:196:202 nd |
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