Select a marker

AF057134-SSR
Primer features
Name Sequence Length Tm  
AF057134-SSR.F ACTACCCAATGCCCACAAAG 20 nt 58.4 °C Primer Stats
AF057134-SSR.R TATCCTCGCCCAAAAGACTG 20 nt 58.4 °C
SSR info
SSR repeat type Perfect
Locus type single locus
Detected loci
Alleles size range 202-224
Number of alleles detected 7
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-10 Fiesta-10 Apple Integrated Map-10
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks clean, compl. band(s)
Sequence
>gi|3688804|gb|AF057134.1|AF057134 Malus domestica NADP-dependent sorbitol 6-phosphate dehydrogenase (S6PDH) gene, complete cds ATGTCCACCGTCACCCTGAGCAGTGGCTACGAGATGCCGGTCATCGGTCTCGGCCTTTGGCGTCTGGAGA AGGACGAGCTTAAAGAGGTCATCTTAAATGCTATTAAGATTGGCTATCGCCATTTTGACTGTGCTGGTAT ACCCTCCATCCCTCACCTCCTCGTTTTTTACATTATTCATGCATGTCTACATATTATTCTGCTTTATATT CAACCGCAAAGAAAGGGGATGTGTTTGTTAATCCTTGTTTTATTTTTCACTTACTTCATTCCGTATTTAT CTTTTTTTAACACAATCGATATTAAAGAAGGGATAATCAAATATTAGACTTTGACTATTGAACAATAATG CTCCCTTGCTAGTATTAATCAATATTCTTACTCATAGCTGTCATATTATAGAACCCATCGTTTTATGTCT ACGTACACGGCTACGGATTGAGGTCATTATCAGAAAAAACGACCCAACCTTTCAAGGGATTTCACTTTAC CTAGCTGAAGTACTAAAGGGTTTAACTGGTTTTTTTCCATTAGCAATTTGGTAAAGGAAATCACATGCAT CATGCACAGAAGATTTTTCAGAAACAAGAAAAGAGTGTACACGCCATAAAGCAGCGGTGCTGCAATGTTA ACGTAACTATTTTTGGTCACATGTAACTATCAAATAAAAAAATGGATGTAGTTTGTAAAGGAGTCAAAAC CATGGGAACCCCGTTTGTTACTTTTATAGTTTAGTAAAATTAATTAATATATGTGTATTTATATATTCTG AGAAAAATATTACTATATGTCGCTAGCCACTGTATGCTTATGTTACTGCATCCATGCATTTGAGATTTTG ATTTTCTTTTTCTCAATATTATTTGGTTGAAAAATTATGATAATTCGTTTGAGGTCATAAAATATTTTCA ATACCTTATATCAATAAACATCTTGTGCTTTTAAACGAAGTCGATGAAGAGAAAGTTTTTAAGTGGTATT CTTTAATTGAGGAGGAAAAATTGTTTTCATTTAGCTTAGTTAAAAAGAAAATTATTTATATTGACCATGT TAGAAATGAACTTGACTTATGCAAACATATGAATTTTTATAAACAAAACAATCAAACAAAAACACAGGTT TGGTTACTATGAGTTGTATAAATAAGTGTTTAATCTTTTACTTTTTTTAGTTTAGGCCGAAAAGGGTATT ATGGTTTTTTCCCAAAAATGGCAGTTTGTCTTTTAGGACGCGATTAAGTGCACCTTCACTAAAGAAAATT TTTAGTGTGTCGAGAACACAATTAGTACGCTATCTGTAATAATACAATTAGTTAAAAATTTAGAAAAAAA TTGCTACCAATTAAATTAGGAAATTGTTATTATCACTAAAAAAATTTCATTCTACACTCATCATATATGT ATTTTTTTCTAATTATAAAAAATTTAAAGTACCAAAAAAAATTATTAAAGTGCTAATAATAATTTTCTTA AATTATTTCACTTATTGTATTCGACTGTGTTCTCGAAACTCTGAAAATTTATACATCCGAGAGCACAACA TGACGAACTAGCTAAGGTACTGTTGTGTTCTGGTGGACAAGACAAATGAGTGGCATACCTTGGTTCCCTA TGTTTTTGGACCAATCCCGAGTTTGCGTCTCACCTTGGGGAAAAGGAATAACCATAATCCAGTCCCTTGT TTGCTTCTTACCTTGGGATGAGGAATAATCCAAGTTCCCCCCCCATGGTTGCTTAATTTGCTTCTCACCT TGGGAAATAAAATAATAATAATACTAATAATAAACGCGAGAGAGTGGTCAGAAGAAGAGTGTCTTAATTA TCAGGAACAATTAACTACTTGCAAAGTTGATTTTTAGAATAAAAACCAGACATTTTGGTCTTCATGTTGT AAATTTAATTTCAGATTAGTTATTGTTGTATGCTTAATAATGGTAAATTATTTTGATATCGCAGCTCATT ACAAAAGTGAAGCAGACGTTGGAGAAGCACTTGCAGAAGCATTTAAGACTGGACTTGTTAAGAGGGAAGA ACTTTTCATTACCACCAAGGTCGGTTTAATTTATTTACCCTTTTTTATTTTTTTATTTTGCTACTTTTAT AAAATAAAATTGGTGTGACAAATTTAGGCTACGCCACAAAACGGACCGGTGATGACCAAGTATTAAGTCG TCATTTATAAGAGTCAAATCTAATACTCTTACTCATGAATGAACAAAAATATATCAAGATTGCAACGCAA ACAACGAAGTATTAGAGTTTATCTCACATTTTCCAAAGAGACTAAAATATAATTTTGTTGTTCTTATATT GCAGATTTGGAATTCAGACCATGGGCATGTGGTGGAGGCCTGTAAGAACAGCCTCGAGAAGCTTCAGATA GATTATCTGGATCTCTACCTGGTTCACTACCCAATGCCCACAAAGCACAATGGTACCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGTTAGATTATTGTGTCACTCAACGCTGTAACGTTACA TAATTATAAATAGTTAATTTACAATGAATTGGTATTTATTTTGCTTTGCTGTATGGTCACAGCAATTGGT AAAACTGCCAGTCTTTTGGGCGAGGATAAGGTGTTGGACATCGATGTAACAATTTCCCTTCAACAAACCT GGGAGGGCATGGAAAAGACCGTCTCTTTGGGCTTAGTTCGCAGCATTGGTCTCAGGTACATCCCATAAGC ATTTATGCTAGACTTTCATCTATGTATCCAAACTCGATTATCTAGAATTGACCAGTGAATGTCACTAAAC CAAATGATCATCGGCTTCCGTTTTGCAGCAACTATGAGCTCTTTCTAACTAGAGATTGCTTGGCTTACTC CAAAATAAAGCCTGCTGTGAGCCAATTTGAAACCCACCCCTATTTCCAGCGCGACTCTCTCGTCAAATTC TGTATGAAACACGGCGTTCTTCCCACAGCTCACACCCCTCTCGGAGGTGCTGCTGCCAACAAGGATATGT TTGGTTCTGTTTCACCTTTGGATGATCCAGTTCTCAATGTAAGTCTTCTCTCTTTTAGCACACACACCAT ATGGAATACAACTGGATCGTAGCGCTAGTAAAAATACAACCATACTAATGATTCACAAACGTATGCTCAC TCAAGCGTTTCATTTACAGGATGTGGCTAAGAAATACGGAAAGAGCGTGGCACAAATCTGTCTGAGGTGG GGAATTCAGAGGAAAACAGCAGTGATTCCAAAATCATCGAAAATTCAGCGATTGAAAGAGAATTTGGAGG TTCTTGAATTCCAGCTGAGCGATGAAGACATGCAGCTCATCTACAGTATCGACAGGAAGTATCGTACCAG TCTACCTTCCAAGACTTGGGGCTTAGACGTGTATGCATAA
User's notes
LucaG (luca.gianfranceschi@unimi.it)
Date 10 February 2006 - Time: 18:43
Sequenced cultivar: Greensleeves
Description: Malus domestica NADP-dependent sorbitol 6-phosphate dehydrogenase (S6PDH) gene, complete cds.

View Sequence Info at PlantGDB
Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
210:216
208:224
208:216
208
216
216

216

202:216


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