AJ000761-SSR
| Primer features | |||||
| Name | Sequence | Length | Tm | ||
| AJ000761-SSR.F | CTGGGTGGATGCTTTGACTT | 20 nt | 58.4 °C |  |
|
| AJ000761-SSR.R | TCAATGACATTAATTCAACTTACAAAA | 27 nt | 57.6 °C | ||
| SSR info | |||||
| SSR repeat type | Imperfect | ||||
| Locus type | single locus | ||||
| Detected loci | |||||
| Alleles size range | 260-272 | ||||
| Number of alleles detected | 5 | ||||
| Expected heterozygosity | nd | ||||
| PCR annealing temp | 60 | ||||
| Sequenced allele size | 0 | ||||
| Linkage group(s) | |||||
| Developed by | HiDRAS consortium | ||||
| Other maps | Discovery-14 Fiesta x Totem-14 Apple Integrated Map-14 | ||||
| Reference publication | Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224 | ||||
| Remarks | clean | ||||
| Sequence | |||||
| >gi|3646323|emb|AJ000761.1|MDAJ761 Malus domestica mRNA for MADS-box protein, MADS7 ATTTTCTTCATGTTACCCTCATCTTTTTATCCCTTTTGGTATACCCTAAACACACAGCCTCCTGAAAGAA AGTTTGTCTACCTCTGATCTTAACCAAGTAGAGAGAGAGAGAGAGAGAGAGAGATGGGCAGAGGCAGAGT TGAGCTGAAGAGGATAGAGAATAAAATTAACAGGCAAGTGACCTTTGCCAAAAGAAGAAATGGGCTGCTC AAGAAAGCTTATGAGCTCTCAGTTCTCTGCGATGCTGAGGTTGCCCTCATTATTTTCTCTAGCCGTGGCA AGCTCTATGAATTCTGTAGCAGTTTCAGCATGATGAAAACGCTTGAAAAGTACCAAAGTTGCAGTTATGG TTCCCTGGAAGCCAACCTACCAGCCAACGAGACCCAGAACAGCTATCAGGACTATTTGATGTTGAAGGCA AGAGTTGAGGTCCTCCAACAATCTCAAAGAAACCTTCTTGGGGAAGATTTGTCCCACCTGAACACAAAGG AGCTTGAGCATCTTGAGCATCAATTGGAGACCTCTTTGAAGCAAATTAGGTCAAGAAAGACTCAGTTTAT TCTCGATCAGCTTTCTGATCTTCAAAACAGGGAACAGATGCTAGTTGAAGCTAACAAAGCCTTGAAGAGG AAGCTGGAAGAAACAAGTGTGCATGCTCCAGAAGGAATGGCATGGGAAGCTGCTGGCCATGGCCCCAACA ACATTCAGCAAACTCGGCTTCCTTCCCACTCAGAAGCCTTCTTCCATCCCTTGGAAGGAAACAACTCCAG TTCCCAAATTGGATACACCCATATGGGTTCAGATAATGAAATGAATGTTGGAAATCCGGGCCAGTATGTT AATGGATATATTCCTGGGTGGATGCTTTGACTTTGATTATGCATATAATATCCATCGTGACATATAATAT ACATATACATATATATATGTATATGTATGGAATAAAATTAGCAATGGATCATGTTGATCAAGCTTTTATA ATATTTTCTGTTATGATCTTATAATTCTATGCAACTTGTAATGATTCTTGAAACAATAAGAATAATATAT ATATATATATATATATATATATAAATATATATATATGTTTTGTAAGTTGAATTAATGTCATTGAAAAACT TCTATGAAATGTATGAGACCAATTTGTATATATAAAGGTTTACAATCCTTCTTTCTT | |||||
| User's notes | |||||
| LucaG (luca.gianfranceschi@unimi.it) Date 10 February 2006 - Time: 18:47 Cultivar: Granny Smith Developmental stage: flower; fruit Title: Malus domestica mRNA for MADS-box protein, MADS7 This sequence was assembled into contig Vie sequence information at PlantGDB LucaG (luca.gianfranceschi@unimi.it) Date 13 February 2006 - Time: 15:14 ATTENTION! This marker is the same as MDAJ761-SSR. | |||||
| Allele size and gel image | |||||
| Cultivar | Allele size |  | |||
|
Fiesta Discovery Gala Florina Nova Easygro TN10-8 Durello di Forli Prima Modial Gala Fuji |
262 262:266 256:264 262:264 260:262 262:264 264:272 nd |
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