AJ000761-SSR
Primer features | |||||
Name | Sequence | Length | Tm | ||
AJ000761-SSR.F | CTGGGTGGATGCTTTGACTT | 20 nt | 58.4 °C | ||
AJ000761-SSR.R | TCAATGACATTAATTCAACTTACAAAA | 27 nt | 57.6 °C | ||
SSR info | |||||
SSR repeat type | Imperfect | ||||
Locus type | single locus | ||||
Detected loci | |||||
Alleles size range | 260-272 | ||||
Number of alleles detected | 5 | ||||
Expected heterozygosity | nd | ||||
PCR annealing temp | 60 | ||||
Sequenced allele size | 0 | ||||
Linkage group(s) | |||||
Developed by | HiDRAS consortium | ||||
Other maps | Discovery-14 Fiesta x Totem-14 Apple Integrated Map-14 | ||||
Reference publication | Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224 | ||||
Remarks | clean | ||||
Sequence | |||||
>gi|3646323|emb|AJ000761.1|MDAJ761 Malus domestica mRNA for MADS-box protein, MADS7 ATTTTCTTCATGTTACCCTCATCTTTTTATCCCTTTTGGTATACCCTAAACACACAGCCTCCTGAAAGAA AGTTTGTCTACCTCTGATCTTAACCAAGTAGAGAGAGAGAGAGAGAGAGAGAGATGGGCAGAGGCAGAGT TGAGCTGAAGAGGATAGAGAATAAAATTAACAGGCAAGTGACCTTTGCCAAAAGAAGAAATGGGCTGCTC AAGAAAGCTTATGAGCTCTCAGTTCTCTGCGATGCTGAGGTTGCCCTCATTATTTTCTCTAGCCGTGGCA AGCTCTATGAATTCTGTAGCAGTTTCAGCATGATGAAAACGCTTGAAAAGTACCAAAGTTGCAGTTATGG TTCCCTGGAAGCCAACCTACCAGCCAACGAGACCCAGAACAGCTATCAGGACTATTTGATGTTGAAGGCA AGAGTTGAGGTCCTCCAACAATCTCAAAGAAACCTTCTTGGGGAAGATTTGTCCCACCTGAACACAAAGG AGCTTGAGCATCTTGAGCATCAATTGGAGACCTCTTTGAAGCAAATTAGGTCAAGAAAGACTCAGTTTAT TCTCGATCAGCTTTCTGATCTTCAAAACAGGGAACAGATGCTAGTTGAAGCTAACAAAGCCTTGAAGAGG AAGCTGGAAGAAACAAGTGTGCATGCTCCAGAAGGAATGGCATGGGAAGCTGCTGGCCATGGCCCCAACA ACATTCAGCAAACTCGGCTTCCTTCCCACTCAGAAGCCTTCTTCCATCCCTTGGAAGGAAACAACTCCAG TTCCCAAATTGGATACACCCATATGGGTTCAGATAATGAAATGAATGTTGGAAATCCGGGCCAGTATGTT AATGGATATATTCCTGGGTGGATGCTTTGACTTTGATTATGCATATAATATCCATCGTGACATATAATAT ACATATACATATATATATGTATATGTATGGAATAAAATTAGCAATGGATCATGTTGATCAAGCTTTTATA ATATTTTCTGTTATGATCTTATAATTCTATGCAACTTGTAATGATTCTTGAAACAATAAGAATAATATAT ATATATATATATATATATATATAAATATATATATATGTTTTGTAAGTTGAATTAATGTCATTGAAAAACT TCTATGAAATGTATGAGACCAATTTGTATATATAAAGGTTTACAATCCTTCTTTCTT | |||||
User's notes | |||||
LucaG (luca.gianfranceschi@unimi.it) Date 10 February 2006 - Time: 18:47 Cultivar: Granny Smith Developmental stage: flower; fruit Title: Malus domestica mRNA for MADS-box protein, MADS7 This sequence was assembled into contig Vie sequence information at PlantGDB LucaG (luca.gianfranceschi@unimi.it) Date 13 February 2006 - Time: 15:14 ATTENTION! This marker is the same as MDAJ761-SSR. | |||||
Allele size and gel image | |||||
Cultivar | Allele size | ||||
Fiesta Discovery Gala Florina Nova Easygro TN10-8 Durello di Forli Prima Modial Gala Fuji |
262 262:266 256:264 262:264 260:262 262:264 264:272 nd |
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