Select a marker

AJ000761-SSR
Primer features
Name Sequence Length Tm  
AJ000761-SSR.F CTGGGTGGATGCTTTGACTT 20 nt 58.4 °C Primer Stats
AJ000761-SSR.R TCAATGACATTAATTCAACTTACAAAA 27 nt 57.6 °C
SSR info
SSR repeat type Imperfect
Locus type single locus
Detected loci
Alleles size range 260-272
Number of alleles detected 5
Expected heterozygosity nd
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-14 Fiesta x Totem-14 Apple Integrated Map-14
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks clean
Sequence
>gi|3646323|emb|AJ000761.1|MDAJ761 Malus domestica mRNA for MADS-box protein, MADS7 ATTTTCTTCATGTTACCCTCATCTTTTTATCCCTTTTGGTATACCCTAAACACACAGCCTCCTGAAAGAA AGTTTGTCTACCTCTGATCTTAACCAAGTAGAGAGAGAGAGAGAGAGAGAGAGATGGGCAGAGGCAGAGT TGAGCTGAAGAGGATAGAGAATAAAATTAACAGGCAAGTGACCTTTGCCAAAAGAAGAAATGGGCTGCTC AAGAAAGCTTATGAGCTCTCAGTTCTCTGCGATGCTGAGGTTGCCCTCATTATTTTCTCTAGCCGTGGCA AGCTCTATGAATTCTGTAGCAGTTTCAGCATGATGAAAACGCTTGAAAAGTACCAAAGTTGCAGTTATGG TTCCCTGGAAGCCAACCTACCAGCCAACGAGACCCAGAACAGCTATCAGGACTATTTGATGTTGAAGGCA AGAGTTGAGGTCCTCCAACAATCTCAAAGAAACCTTCTTGGGGAAGATTTGTCCCACCTGAACACAAAGG AGCTTGAGCATCTTGAGCATCAATTGGAGACCTCTTTGAAGCAAATTAGGTCAAGAAAGACTCAGTTTAT TCTCGATCAGCTTTCTGATCTTCAAAACAGGGAACAGATGCTAGTTGAAGCTAACAAAGCCTTGAAGAGG AAGCTGGAAGAAACAAGTGTGCATGCTCCAGAAGGAATGGCATGGGAAGCTGCTGGCCATGGCCCCAACA ACATTCAGCAAACTCGGCTTCCTTCCCACTCAGAAGCCTTCTTCCATCCCTTGGAAGGAAACAACTCCAG TTCCCAAATTGGATACACCCATATGGGTTCAGATAATGAAATGAATGTTGGAAATCCGGGCCAGTATGTT AATGGATATATTCCTGGGTGGATGCTTTGACTTTGATTATGCATATAATATCCATCGTGACATATAATAT ACATATACATATATATATGTATATGTATGGAATAAAATTAGCAATGGATCATGTTGATCAAGCTTTTATA ATATTTTCTGTTATGATCTTATAATTCTATGCAACTTGTAATGATTCTTGAAACAATAAGAATAATATAT ATATATATATATATATATATATAAATATATATATATGTTTTGTAAGTTGAATTAATGTCATTGAAAAACT TCTATGAAATGTATGAGACCAATTTGTATATATAAAGGTTTACAATCCTTCTTTCTT
User's notes
LucaG (luca.gianfranceschi@unimi.it)
Date 10 February 2006 - Time: 18:47
Cultivar: Granny Smith
Developmental stage: flower; fruit
Title: Malus domestica mRNA for MADS-box protein, MADS7
This sequence was assembled into contig
Vie sequence information at PlantGDB

LucaG (luca.gianfranceschi@unimi.it)
Date 13 February 2006 - Time: 15:14
ATTENTION! This marker is the same as MDAJ761-SSR.

Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
262
262:266
256:264
262:264
260:262
262:264

264:272

nd


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