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CN445290-SSR
Primer features
Name Sequence Length Tm  
CN445290-SSR.F TCTCAGTTGCTCTGGCTTTG 20 nt 58.4 °C Primer Stats
CN445290-SSR.R GTTTGCAATCAATGCCACTCTTC 23 nt 61.1 °C
SSR info
SSR repeat type Perfect
Locus type single locus
Detected loci
Alleles size range 230-242
Number of alleles detected 3
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-6
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks clean
Sequence
>gi|46424554|gb|CN445290.1|CN445290 Mdfw2002h21.y1 Mdfw Malus x domestica cDNA clone Mdfw2002h21 5', mRNA sequence TCACTTTCTCAGTTGCTCTGGCTTTGATTTTAAGAGAGAGAGAGAGAGAGAGAGAGATTATGGTTTTTCG AGAAATTCAAGGTTTTATGTGTAGTAAGTTCACAGAATATAGAGATTTATTTTCTTTGAATTGAATCTTG ATGGTTGCTGTTCTTAGAGATTTTAGCGAGTGGCAATCGAGCTGCTGTGTTAAGGATCTGAGCTGAAAGG CATTGGTTTTTAGAAGAGTGGCATTGATTGCATTCCTTATTTTGTGTAATTGCAGTTGCTATCTTGTTCA ATTTGCAAAATTTAATAGAGTTTTAGTTGCCGGAAATTTCATCAATGTCGGAAAAGAGTAAGCTTCCATC GAAGTTTCTTTTC
User's notes
LucaG (luca.gianfranceschi@unimi.it)
Date 13 February 2006 - Time: 10:20

Sequence
Title: Mdfw2002h21.y1 Mdfw Malus x domestica cDNA clone Mdfw2002h21 5', mRNA sequence.
Type: mRNA
Length: 363 bp
Organism: Malus x domestica
GenBank Accession: CN445290

Click here to see other mRNA sequences which are wholly contained within (substrings of) sequence 46424554


Assembly
This sequence was assembled into contig

Library
Name: Mdfw
Cultivar: GoldRush
Tissue:Flower

View Sequence Info at PlantGDB



Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
230
230:236
242
230
230
230

230:242

236:242


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