Select a marker

Hi01c11
Primer features
Name Sequence Length Tm  
Hi01c11.F TTGGGCCACTTCACAACAG 19 nt 57.3 °C Primer Stats
Hi01c11.R GTTTGAGTTTGATCTCCAACATTAC 25 nt 60.9 °C
SSR info
SSR repeat type Imperfect
Locus type multi-locus
Detected loci
Alleles size range 138-260
Number of alleles detected 16
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-16 Fiesta-8 Apple Integrated Map-16
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks clean
Sequence
>Hi01C11 CGAAACAGTATGCGATTCAATGACAACTGAAAAGGCTGAAAGGGAAGTAG AGGTACCTGGTGATATTAGGATACAATCAGAATAGCATTGAAATGCGTTA GCTTTAGTCTTAACACATTTTTCTTCTTTAGAGAAAAGAGGCAGGGGAAA GCAATAGGAACAGTCTGACAGGATTTTCTATAAACAAGATTTGTGAATGA ATGTTTGGTTGGGCCACTTCACAACAGTTGTTCACTATCACTCTAGGTTC TAAAAGTTCTATACATACATACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACACACACAC ACGCACACACATACCAATATTATTGCTTTAAATAACTATTAATTAAGAAG GTACGAATATTAGTAATGTTGGAGATCAAACTCCCAACAACTCAAATAGG TGAAAGAAAGAGGAAGCAATATGGGTCATACATGAATATGTACAAGTTTT CCTTCTTCAACTAAAGCATTTAAATTCCTCTAATCTTCACCCTTTATAAC CATAAAAACAACAATTCCAGATTTTGTGTCACGCTTCG
User's notes
THERE ARE NO USER'S NOTES.
Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
138:216:220:260
138:204:234:240
138:144:152:216
138:152:202:206:220
138:146:152:206:220
138:144:146:204:234:240

138:148:176:220

138:148:152:218


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