Select a marker

Hi01d05
Primer features
Name Sequence Length Tm  
Hi01d05.F GGTATCCTCTTCATCGCCTG 20 nt 60.5 °C Primer Stats
Hi01d05.R TTAGATTGACGTTCCGACCC 20 nt 58.4 °C
SSR info
SSR repeat type Imperfect
Locus type presumed multi-locus
Detected loci
Alleles size range 210->330
Number of alleles detected 16
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Fiesta-7 M.27 x M.116-6 M.27 x M.116-7
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks extra bands
Sequence
>Hi01D05 TTTTTGGGCCNCACGTCGCATGCTTCCGGCCGCCATGGCGGCCGCGGGAATTCGATTGTT TCAGATCTGGCTCATCGCCGAAACAATGGTTTGAGAAAAGGAAAAGAGAGACGGACCAGA AGGTTTGGGGTGTCTCTGAGGAAACTTGATGCGAGGTATCCTCTTCATCGCCTGGGCTCC ACCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCcTcTcTCTCTTCT GTAGTACCAGTTCCTCCGGAGACGACGGTTGAAAAAGAAGAGCTCAAATCTTCCACCAGC GATTTGTTTGGCTACTCGGGGATGAACACAAGTTGCTACAAAGGTCAGTTAGTTCAAGGG TGAGGGTTGCCGGGTCGGAACGTCAATCTAAATCGCGATCCACCCTTTTCATAAACTGGG TTGGGCTTCGGGTTCTATCGGGTCGTAAATAGGAAGTTCGTAACGGAATCAAGTTCAACT TTGCTACACGATGGATGAGTAGTTTCTCTTCAAAACACTGTGG
User's notes
THERE ARE NO USER'S NOTES.
Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
210:242:320:>330 a
210:222:244:300:320:>330 b
212:222:242:300:320
210:222:>330 a/b
212:226:242:>330 a/b
210>330 b

210:222:328

210:242:322:>330 a/b


admin Send comments to Luca Gianfranceschi