Select a marker

Hi01d06
Primer features
Name Sequence Length Tm  
Hi01d06.F GGAGAGTTCCTGGGTTCCAC 20 nt 62.5 °C Primer Stats
Hi01d06.R AAGTGCACCCACACCCTTAC 20 nt 60.5 °C
SSR info
SSR repeat type Imperfect
Locus type multi-locus
Detected loci
Alleles size range 115-166
Number of alleles detected 12
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-11 Discovery-16 Fiesta-16 Malling9-17 Apple Integrated Map-16
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks extra bands
Sequence
>Hi01D06 TTTTTGGGCCNNCGTCGCATGCTTCCGGCCGCCATGGCGGCCGCGGGAATTCGATTGTTT CAGATCTGGCTCATCGCCGACACCCACGACCTCGTCGGAGATAGGTGTGCCTATTCCTGA GTCGACAACCACGGGCTCGTAGGATATGGGTGAGCTTTACCTTGAGCCAGTCTCGTTCTG AAACCTTGGCAATAACAAGGTAAAACTCAATAAACCACATCCAAGCATCNATCTAACACG GATAGAGGAAACACGAAGCTTACCTAATCGGAAAAACGAAAGGATCTCGCCGGAGAGTTC CTGGGTTCCACCGTTCCTCGCAGAGACGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGAATGCTGATGACGATGATGATGCTTGAAC GATGGTAAGGGTGTGGGTGCACTTGGGTGTTCATGGGTGAAGGGAATGGAAAGGGATGAG AGGG
User's notes
THERE ARE NO USER'S NOTES.
Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
125:133
124:131
115:156
156:164
135:166
nd

137:131:124

129:156


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