Select a marker

Hi02a09
Primer features
Name Sequence Length Tm  
Hi02a09.F ATCTCTAAGGGCAGGCAGAC 20 nt 60.5 °C Primer Stats
Hi02a09.R CTGACTCTTTGGGAAGGGC 19 nt 59.5 °C
SSR info
SSR repeat type Imperfect
Locus type single locus
Detected loci
Alleles size range 138-158
Number of alleles detected 4
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-11 Apple Integrated Map-11
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks clean
Sequence
>Hi02A09 GATTGGGCCCTCTAGTATGCATGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAAT TCGCCCTTGTTTCAGATCTGGCTCATCGCATCTCTAAGGGCAGGCAGACCACGTAAAAAG ATATTGCTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGA GAGAGAGAGAGAGAGAGAGAGCAATGGCAGAAGTGAGTAACAAGCAGGTGATACTGAGGG ATTATGTAGTCAAGGCCCTTCCCAAAGAGTCAGACTTGTGTGTGATCAACACCGCTACTA TCAAGTTGAAGCTTCCTGCAGAGACTGATCAGCCAGCTGATGCGGTTACATCCTCAAAGG TACAACTAGACCTACTTAAGAACCTCTACTTGTCTTGCGATCCCTACCAACGACTCCTTA TGGAAAGCGTCCAAGGGCTCAGCGTCCNATCAATGTCCTCCTATACGCCTGGCTCTGTAA GCAAACCCATCGGCGATGA
User's notes
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Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
138
138:158
nd
158
138
138:158

138

nd


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