Select a marker

Hi07d11
Primer features
Name Sequence Length Tm  
Hi07d11.F CCTTAGGGCCTTTGTGGTAAG 21 nt 61.3 °C Primer Stats
Hi07d11.R GTTTGAGCCGATTAGGGTTTAGGG 24 nt 65.2 °C
SSR info
SSR repeat type Imperfect
Locus type multi-locus
Detected loci
Alleles size range 200-232
Number of alleles detected 10
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-11 Fiesta-11 Fiesta-16 Royal Gala-11 Malling9-11 Robusta5-15 M.27 x M.116-11
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks clean
Sequence
>Hi07d11con AGGGTCTATTTCCGGTCAC CTCCGCACCGAGNTTACGGTGTTTGAGAAGGTAGAAACCTTTTCCTCTCT CCTTGNTTCTTCATGGTTGTACTTAGATCGGAGCTTGAAGCTCTAGTTTT CAGGTGACCGGAGCTGTAGCAGCTCCGGCCTTCTTCTTCCTCGGCAGCAG GCCATTCGGCCTTTTTTTCCCTCCCCCTCGGGCCTTAGGCCCGTGTTGTC TTAAGCCCAAAACCCTAGCCCCCTTTAGNTTTTTAAGTTTTTTTCATTGT TTTTAAAACCCTATAAGGCCTCGGGCCTTATATATAATTGGCCTTGGGCC GGTTCCTTTTAAAGGGCTTAAAGCCCTGTTTCTTTATTAAGGCCTTAGGG CCTTTGTGGTAAGTGTGTGTGTGTGTGTTTAGGCACGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTTATGCATGCACATGTCATGSCGTGTGTGTG TGTATGTGTTTGAGCTAAAGCCCAAACCCCAATTCTCACCCTAATACCCT TTTAACCCAAAAACCCTAGGTTCCTAAAATCCTTTAAACCCTAAACCCTA ATCGGCTCAAACCCTTTATGTGGAATATTCTGTTAGGGAATATTTCATTA GAAAATATTTCGTCAGGGAATATTCTAGGAATATTCTATTGACTTTTACA GAATTTATTCCGGGACCCTTCTTAGGGTAATTCGGCGATGAGCCAGATCT GAAAACAAGGGCGAATTCTGCGAGATATCCATCAGCACCTGGCGGCCGCT NGAGCATGCACTTTAGGTNGGCACCCACNTCAGCCACGTATATGNGNCAT TGTTATACANGNTTC
User's notes
THERE ARE NO USER'S NOTES.
Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
 		214:218:222:232
200:216:222
200:220
214:220
220
216:232

200:218:226

212:220

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