Select a marker

MS06g03
Primer features
Name Sequence Length Tm  
MS06g03.F CGGAGGGTGTGCTGCCGAAG 20 nt 66.6 °C Primer Stats
MS06g03.R GCCCAGCCCATATCTGCT 18 nt 58.4 °C
SSR info
SSR repeat type perfect
Locus type presumed multi-locus
Detected loci
Alleles size range 154-190
Number of alleles detected 9
Expected heterozygosity 0.87
PCR annealing temp 0
Sequenced allele size 0
Linkage group(s)
Developed by Warwick HRI
Other maps Discovery-10 Fiesta-10 Fiesta-10 Fiesta x Totem-10 PI 613988-10 Royal Gala-10 Apple Integrated Map-10 M.27 x M.116-10
Reference publication Liebhard, R. Gianfranceschi, L. Koller, B. Ryder, C. D. Tarchini, R. Weg, E. van de Gessler, C. (2002) Development and characterization of 140 new microsatellites in apple (Malus x domestica Borkh.). Molecular Breeding 10(4): 217-241
Remarks
Sequence
>gi|58003368|gb|AY861489.1| Malus x domestica clone MS06G03 microsatellite sequence CTTNTCTNCTGCGNNGTCTATCCTCCAACCGGAGGGTGCTGCCGAAGGAGCGAGAGAGAGAGAGAGAGAG AGANAGANAGAGAGAGAGAGAGAGAGGAAANGTAGCCGGAGCCANGTCTGGTGCTGAAAATGTAAAAACG AAAAACCCCAATTTTCCAAAACCCCAAATTCTTTGTATTCGGATCGACAAATGAGCAGATATGGGCTGGG CTTATTATTANGTATATGATGGGCTTACATTTTACGAACCCAA
User's notes
Luca Gianfranceschi (luca.gianfranceschi@unimi.it)
Date 28 September 2005 - Time: 14:47
This SSR marker cosegregates with the enzyme Md-ACO1 (1-aminocyclopropane-1-carboxylate oxydase). Ref. Euphytica 141:1-2 181-190.

LucaG (luca.gianfranceschi@unimi.it)
Date 13 February 2006 - Time: 15:08

Sequence
Title:
Malus x domestica clone MS06G03 microsatellite sequence.
Type: DNA
Length: 253 bp
Organism: Malus x domestica
GenBank Accession: AY861489

Cultivar: Fiesta syn. Red Pippin

View Sequence Info at PlantGDB



Allele size and gel image
Cultivar Allele size
Not available


admin Send comments to Luca Gianfranceschi