MS14h03
Primer features | |||||
Name | Sequence | Length | Tm | ||
MS14h03.F | CGCTCACCTCGTAGACGT | 18 nt | 58.4 °C | ||
MS14h03.R | ATGCAATGGCTAAGCATA | 18 nt | 49.3 °C | ||
SSR info | |||||
SSR repeat type | perfect | ||||
Locus type | single locus | ||||
Detected loci | |||||
Alleles size range | 114-140 | ||||
Number of alleles detected | 6 | ||||
Expected heterozygosity | 0.8 | ||||
PCR annealing temp | 57 | ||||
Sequenced allele size | 130 | ||||
Linkage group(s) | |||||
Developed by | Warwick HRI | ||||
Other maps | Fiesta x Discovery-3 Prima x Fiesta-3 Fiesta-3 Prima-3 Discovery-3 Fiesta-3 Fiesta x Totem-3 Apple Integrated Map-3 M.27 x M.116-3 | ||||
Reference publication | Liebhard, R. Gianfranceschi, L. Koller, B. Ryder, C. D. Tarchini, R. Weg, E. van de Gessler, C. (2002) Development and characterization of 140 new microsatellites in apple (Malus x domestica Borkh.). Molecular Breeding 10(4): 217-241 | ||||
Remarks | |||||
Sequence | |||||
>gi|58003352|gb|AY861473.1| Malus x domestica clone MS14H03 microsatellite sequence TCAAGCTATANAAATTTTCTGAGCGCTCACCTCGTAGACGTTTGCGAAGCCCACCGAAAGGTGGAAGCCC TCCCAGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGCCTGAAAGCAT ATGCTTAGCCATTGCATACACAAAACATATGAGGTGAGAAAAAGTAAAGTCAGAGCATAAATGATCTTTC TGTTAGAGACGAAAGAAATACAAACATTTTGATCATGGTAGACCGACATGTCTTTTTTCTTTTGTTTATA CACATGCAGAGAGCTAGACTCAACAACAACAACAACAACAACAAAGCCTTTTCCCACTAAGTGGGGTCGG CTATACGAATCCTANAACGCCATTGCGCTCGGTTTTGTGTTATGTCCTCCGTTAGATCCAA | |||||
User's notes | |||||
LucaG (luca.gianfranceschi@unimi.it) Date 13 February 2006 - Time: 15:12 Sequence Cultivar: Fiesta syn. Red Pippin View Sequence Info at PlantGDB | |||||
Allele size and gel image | |||||
Cultivar | Allele size | ||||
Not available |
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