Select a marker

MSS4
Primer features
Name Sequence Length Tm  
MSS4.F AAGTGGTATTTGAGGGTGGG 20 nt 58.4 °C Primer Stats
MSS4.R GTATGTAATGTGCCTTCGTGC 21 nt 59.4 °C
SSR info
SSR repeat type unknown
Locus type
Detected loci
Alleles size range 282-300
Number of alleles detected 3
Expected heterozygosity 0.67
PCR annealing temp 59
Sequenced allele size 282
Linkage group(s)
Developed by CGAF, ONF, Campus INRA, Ardon, France,
Other maps Fiesta x Totem-10 M.27 x M.116-10
Reference publication Oddou-Muratorio, S; Aligon, C; Decroocq, S; Plomion, C; Lamant, T; Mush-Demesure, B (2001) Microsatellite primers for Sorbus torminalis and related species. Molecular Ecology Notes 1(4): 297-299
Remarks SSR marker developed in Sorbus torminalis
Sequence
>gi|20067404|emb|AJ313037.1| Sorbus torminalis microsatellite DNA, clone 22 GCGTCATCCAAGCAAGTTCAATATGGGGACGGATTTCCATTGTTTCAAATACAAAATTGAGCCAAAATGG GAGGATCCTGTGTGTGCTAATGGAGGAAACTGGACTGTCACTTATCCTAAGGGGAAATCTGATACCTCTT GGTTGAATACGGTATGGTCTAAACTGAAAGTGGTATTTGAGGGTGGGTAAATTGATATATATATGTGTGG TGTGTGTGTGTGTGTGTGTGTGTGCCCTCTAATTGTTTTGTATTTTCTGGTACCAGTTGCTAGCAAATGA TAGGAGNNCAGTTTGATCATGNAAGATGAAATCTGTGGAGCAGTTGTCAGTGTCANAAAAAGCCAAGAAA AAATAGCTCTTTGGACCAAGAATGCAACAAATGAAGCTGCTCAGGTAATTGCTGCTTGACTCCCTGTATG TTGTGTAATGCACGAAGGCACATTACATACATGAAAGTTCAAAATTTTAAAAGTTTCGTATCATTAGATA GAATTTTCACAGCATCACATTTTGGGTTTGTTGCTTTAGCGGAAGGAAAGATTTCCTGTCTATTTAGGAA GAAAGACAGAATTATTCGTTATGTTGATCAATTTCCCTGTCCCTAAATCCATCAAGACCCTTGGCGATTC AACTGCTCTCCTCTTTAGTCAAATAGAAGGTCTCTTTCAATAAAGCCAGAAGGTGGCTACTTGGCCACTT GGGCCAAATAGCTTATAGGAATCTATTTTGT
User's notes
THERE ARE NO USER'S NOTES.
Allele size and gel image
Cultivar Allele size
Not available


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