U78948-SSR
Primer features | |||||
Name | Sequence | Length | Tm | ||
U78948-SSR.F | GATCGTCCGCCACCTTAAT | 19 nt | 57.3 °C | ||
U78948-SSR.R | AGGGTTTTCATCATGCACATT | 21 nt | 55.5 °C | ||
SSR info | |||||
SSR repeat type | Imperfect | ||||
Locus type | single locus | ||||
Detected loci | |||||
Alleles size range | 178-190 | ||||
Number of alleles detected | 7 | ||||
Expected heterozygosity | n.d. | ||||
PCR annealing temp | 60 | ||||
Sequenced allele size | 0 | ||||
Linkage group(s) | |||||
Developed by | HiDRAS consortium | ||||
Other maps | Discovery-14 Fiesta-14 Apple Integrated Map-14 | ||||
Reference publication | Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224 | ||||
Remarks | extra bands | ||||
Sequence | |||||
>gi|3947984|gb|U78948.1|MDU78948 Malus domestica MADS-box protein 2 mRNA, complete cds GTCACTCATATATAGACAGAGAAGGAGAGAGACCAGACCCCTACCTTAGAGAGAGAGAGAGAGCAGAAGC CATCTGTGTGTCAACTGGTTCTTTCTCTCCCATTTTTCTTGGTTTCTTGGTGGGATTTCTGGTTTCTCTA AACTAAGAGATCAGTTCAGCAGGAACAACCGTATATATATTACTAGGATTATTAATTATTTATTTATAAT AATAAATAATTGTTAGAGAGATTATGGGGAGGGGAAGGGTGCAGCTGAAGAGAATTGAGAACAAGATCAA CAGGCAGGTGACCTTCTCAAAGAGAAGGTCGGGGCTGATGAAGAAAGCTCATGAGATTTCTGTGCTTTGT GATGCTGAGGTTGCTTTGATTATCTTCTCCACCAAGGGCAAGCTCTTTGAGTACTCCAATGATTCCTGCA TGGAAAGGATCCTGGAAAGGTACGAAAGATACTCATATACAGAGAGGCAGCTTCTTGCAAATGATAATGA ATCCACTGGAAGCTGGACTCTGGAACATGCAAAGCTCAAGGCTAGGGTGGAGGTTTTACAAAGAAATCAA AGACACTATATGGGAGAAGATCTCCAATCCTTAAGTCTCAAAGAGCTTCAAAATTTAGAGCAACAGCTTG ATTCTGCACTGAAGCACATAAGGTCAAGAAAGAACCAAGTTATGTACGAATCGATTTCTGAGCTCCAGAA GAAGGATAAGGCATTGCAGGAGCAAAACAACTTGCTGGCAAAGAAGGTGAAGGAGAAGGAGAACGCAGTA GCTCAACAGGCCCAATTGGAGCATGTGCAGGAGCAGAGGTTGAACTCCTCTTCCTCCCTTCTTCCACGGG CATTGCAGTCCTTGAATTTCGGCAGCGGGTCCAATTACCAGGCCATTAGATCAAGTGAAGGAATACCAGG AGATAATCAGCAGTATGGAGATGAAACCCCAACTCCACATAGACCTAACATGCTGCTGCCCGCTTGGATC GTCCGCCACCTTAATGAATAGAAGAATTCATCACCATGAAATAATATTATCTCCAAAGGGAATAATATTA TGTGACATCAATTAATCAAGTAAACATATTATACTTATATATATATATATATATATATCTATATATCTAT ACCAAGAAATTAATTGGTAATGTGCATGATGAAAACCCTAGACTCGATCTATCTCTAAATGTGTATCGTA TGTTGGAATTCATTAATATATCTTAAGGGCTTGTTTGGTA | |||||
User's notes | |||||
LucaG (luca.gianfranceschi@unimi.it) Date 13 February 2006 - Time: 14:23 Sequence Assembly Library Reference View Sequence Info at PlantGDB | |||||
Allele size and gel image | |||||
Cultivar | Allele size | ||||
Fiesta Discovery Gala Florina Nova Easygro TN10-8 Durello di Forli Prima Modial Gala Fuji |
188:190 180:186 178:186 nd 178:182 nd 180:186 nd |
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