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U78948-SSR
Primer features
Name Sequence Length Tm  
U78948-SSR.F GATCGTCCGCCACCTTAAT 19 nt 57.3 °C Primer Stats
U78948-SSR.R AGGGTTTTCATCATGCACATT 21 nt 55.5 °C
SSR info
SSR repeat type Imperfect
Locus type single locus
Detected loci
Alleles size range 178-190
Number of alleles detected 7
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-14 Fiesta-14 Apple Integrated Map-14
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks extra bands
Sequence
>gi|3947984|gb|U78948.1|MDU78948 Malus domestica MADS-box protein 2 mRNA, complete cds GTCACTCATATATAGACAGAGAAGGAGAGAGACCAGACCCCTACCTTAGAGAGAGAGAGAGAGCAGAAGC CATCTGTGTGTCAACTGGTTCTTTCTCTCCCATTTTTCTTGGTTTCTTGGTGGGATTTCTGGTTTCTCTA AACTAAGAGATCAGTTCAGCAGGAACAACCGTATATATATTACTAGGATTATTAATTATTTATTTATAAT AATAAATAATTGTTAGAGAGATTATGGGGAGGGGAAGGGTGCAGCTGAAGAGAATTGAGAACAAGATCAA CAGGCAGGTGACCTTCTCAAAGAGAAGGTCGGGGCTGATGAAGAAAGCTCATGAGATTTCTGTGCTTTGT GATGCTGAGGTTGCTTTGATTATCTTCTCCACCAAGGGCAAGCTCTTTGAGTACTCCAATGATTCCTGCA TGGAAAGGATCCTGGAAAGGTACGAAAGATACTCATATACAGAGAGGCAGCTTCTTGCAAATGATAATGA ATCCACTGGAAGCTGGACTCTGGAACATGCAAAGCTCAAGGCTAGGGTGGAGGTTTTACAAAGAAATCAA AGACACTATATGGGAGAAGATCTCCAATCCTTAAGTCTCAAAGAGCTTCAAAATTTAGAGCAACAGCTTG ATTCTGCACTGAAGCACATAAGGTCAAGAAAGAACCAAGTTATGTACGAATCGATTTCTGAGCTCCAGAA GAAGGATAAGGCATTGCAGGAGCAAAACAACTTGCTGGCAAAGAAGGTGAAGGAGAAGGAGAACGCAGTA GCTCAACAGGCCCAATTGGAGCATGTGCAGGAGCAGAGGTTGAACTCCTCTTCCTCCCTTCTTCCACGGG CATTGCAGTCCTTGAATTTCGGCAGCGGGTCCAATTACCAGGCCATTAGATCAAGTGAAGGAATACCAGG AGATAATCAGCAGTATGGAGATGAAACCCCAACTCCACATAGACCTAACATGCTGCTGCCCGCTTGGATC GTCCGCCACCTTAATGAATAGAAGAATTCATCACCATGAAATAATATTATCTCCAAAGGGAATAATATTA TGTGACATCAATTAATCAAGTAAACATATTATACTTATATATATATATATATATATATCTATATATCTAT ACCAAGAAATTAATTGGTAATGTGCATGATGAAAACCCTAGACTCGATCTATCTCTAAATGTGTATCGTA TGTTGGAATTCATTAATATATCTTAAGGGCTTGTTTGGTA
User's notes
LucaG (luca.gianfranceschi@unimi.it)
Date 13 February 2006 - Time: 14:23

Sequence
Title: Malus domestica MADS-box protein 2 mRNA, complete cds.
Type: mRNA
Length: 1230 bp
Organism: Malus x domestica
GenBank Accession: U78948

Assembly
This sequence was assembled into contig

Library
Cultivar: Fuji
Tissue:floral bud

Reference
PubMed: 10444080

View Sequence Info at PlantGDB



Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
188:190
180:186
178:186
nd
178:182
nd

180:186

nd


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