Select a marker

U78949-SSR
Primer features
Name Sequence Length Tm  
U78949-SSR.F TTTGTCTACCTCTGATCTTAACCAA 25 nt 60.9 °C Primer Stats
U78949-SSR.R CAGCATCGCAGAGAACTGAG 20 nt 60.5 °C
SSR info
SSR repeat type Perfect
Locus type multi-locus
Detected loci
Alleles size range 172-225
Number of alleles detected 12
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-6 Discovery-14 Fiesta-6 Apple Integrated Map-14
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks extra bands
Sequence
>gi|5777903|gb|U78949.1|MDU78949 Malus domestica MADS-box protein 3 mRNA, complete cds AGTTTGTCTACCTCTGATCTTAACCAAGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGATGGGCAGAGGCAGAGTTGAGCTGAAGAGGATAGAGAATAAAATTAACAGGCAAGTGAC TTTTGCCAAAAGAAGAAATGGGCTGCTCAAGAAAGCTTATGAGCTCTCAGTTCTCTGCGATGCTGAGGTT GCCCTCATTATTTTCTCTAGCCGTGGCAAGCTCTATGAATTCTGTAGCAGTTTCAGCATGATGAAAACGC TTGAAAAGTACCAAAGTTGCAGTTATGGTTCCCTGGAAGCCAACCTACCAGCCAACGAGACCCAGAACAG CTATCAGGACTATTTGATGTTGAAGGCAAGAGTTGAGGTCCTCCAACAATCTCAAAGAAACCTTCTTGGG GAAGATTTGTCCCACCTGAACACAAAGGAGCTTGAGCATCTTGAGCATCAATTGGAGACCTCTTTGAAGC AAATTAGGTCAAGAAAGACTCAGTTTATTCTCGATCAGCTTTCTGATCTTCAAAACAGGGAACAGATGCT AGTTGAAGCTAACAAAGCCTTGAAGAGGAAGCTGGAAGAAACAAGTGTGCAAGCTCCAGAAGGAATGGCA TGGGAAGCTGCTGGCCATGGCCCCAACAACATTCAGCAAACTCGGCTTCCTTCCCACTCAGAAGCCTTCT TCCATCCCTTGGAAGGAAACAACTCCAGTTCCCAAATTGGATACACCCATATGGGTTCAGATAATGAAAT GAATGTTGGAAATCCGGGCCAGTATGTTAATGGATATATTCCTGGGTGGATGCTTTGACTTTGATTATGC ATATAATATCCATCGTGACATATAATATACATATACATATACATATACATATATATATATATGTATATGT ATGGAATAAAATTAGCAAGGGATCATGTTGATCAAGCTTGTATATTATTTTCTGTTATGATCTTATAATT CTATGCAACTTGTAATGATTCTTGAAACAATAAGAATAATATATATATATATATATAAGTTTTGTAAGTT GAATTAATGTCATTGAAAAACTTCTATGAAATGTATGAGACCAATTTGTATATA
User's notes
LucaG (luca.gianfranceschi@unimi.it)
Date 13 February 2006 - Time: 14:25

Sequence
Title:
Malus domestica MADS-box protein 3 mRNA, complete cds.
Type: mRNA
Length: 1104 bp
Organism: Malus x domestica
GenBank Accession: U78949

Click here to see other mRNA sequences which are wholly contained within (substrings of) sequence 5777903

Assembly
This sequence was assembled into contig

Library
Cultivar:
Fuji
Tissue:floral bud

Reference
PubMed: 10787044

View Sequence Info at PlantGDB



Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
176:209:215:225
174:209:221:225
180:190:205
176:205:219
174:219
176:207:219

174:215

190:205


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