Hi07d11
Primer features | |||||
Name | Sequence | Length | Tm | ||
Hi07d11.F | CCTTAGGGCCTTTGTGGTAAG | 21 nt | 61.3 °C | ||
Hi07d11.R | GTTTGAGCCGATTAGGGTTTAGGG | 24 nt | 65.2 °C | ||
SSR info | |||||
SSR repeat type | Imperfect | ||||
Locus type | multi-locus | ||||
Detected loci | |||||
Alleles size range | 200-232 | ||||
Number of alleles detected | 10 | ||||
Expected heterozygosity | n.d. | ||||
PCR annealing temp | 60 | ||||
Sequenced allele size | 0 | ||||
Linkage group(s) | |||||
Developed by | HiDRAS consortium | ||||
Other maps | Discovery-11 Fiesta-11 Fiesta-16 Royal Gala-11 Malling9-11 Robusta5-15 M.27 x M.116-11 | ||||
Reference publication | Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224 | ||||
Remarks | clean | ||||
Sequence | |||||
>Hi07d11con AGGGTCTATTTCCGGTCAC CTCCGCACCGAGNTTACGGTGTTTGAGAAGGTAGAAACCTTTTCCTCTCT CCTTGNTTCTTCATGGTTGTACTTAGATCGGAGCTTGAAGCTCTAGTTTT CAGGTGACCGGAGCTGTAGCAGCTCCGGCCTTCTTCTTCCTCGGCAGCAG GCCATTCGGCCTTTTTTTCCCTCCCCCTCGGGCCTTAGGCCCGTGTTGTC TTAAGCCCAAAACCCTAGCCCCCTTTAGNTTTTTAAGTTTTTTTCATTGT TTTTAAAACCCTATAAGGCCTCGGGCCTTATATATAATTGGCCTTGGGCC GGTTCCTTTTAAAGGGCTTAAAGCCCTGTTTCTTTATTAAGGCCTTAGGG CCTTTGTGGTAAGTGTGTGTGTGTGTGTTTAGGCACGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTTATGCATGCACATGTCATGSCGTGTGTGTG TGTATGTGTTTGAGCTAAAGCCCAAACCCCAATTCTCACCCTAATACCCT TTTAACCCAAAAACCCTAGGTTCCTAAAATCCTTTAAACCCTAAACCCTA ATCGGCTCAAACCCTTTATGTGGAATATTCTGTTAGGGAATATTTCATTA GAAAATATTTCGTCAGGGAATATTCTAGGAATATTCTATTGACTTTTACA GAATTTATTCCGGGACCCTTCTTAGGGTAATTCGGCGATGAGCCAGATCT GAAAACAAGGGCGAATTCTGCGAGATATCCATCAGCACCTGGCGGCCGCT NGAGCATGCACTTTAGGTNGGCACCCACNTCAGCCACGTATATGNGNCAT TGTTATACANGNTTC | |||||
User's notes | |||||
THERE ARE NO USER'S NOTES. | |||||
Allele size and gel image | |||||
Cultivar | Allele size | ||||
Fiesta Discovery Gala Florina Nova Easygro TN10-8 Durello di Forli Prima Modial Gala Fuji |
214:218:222:232 200:216:222 200:220 214:220 220 216:232 200:218:226 212:220 |
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