AJ001681-SSR
Primer features | |||||
Name | Sequence | Length | Tm | ||
AJ001681-SSR.F | CCTGAGGTTATTGACCCAAAA | 21 nt | 57.4 °C | ||
AJ001681-SSR.R | CACTCAGTTGGAAAACCCTACA | 22 nt | 60.3 °C | ||
SSR info | |||||
SSR repeat type | Perfect | ||||
Locus type | single locus | ||||
Detected loci | |||||
Alleles size range | 169-195 | ||||
Number of alleles detected | 6 | ||||
Expected heterozygosity | n.d. | ||||
PCR annealing temp | 60 | ||||
Sequenced allele size | 0 | ||||
Linkage group(s) | |||||
Developed by | HiDRAS consortium | ||||
Other maps | Fiesta-17 | ||||
Reference publication | Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224 | ||||
Remarks | clean | ||||
Sequence | |||||
>gi|3646333|emb|AJ001681.1|MDAJ1681 Malus domestica mRNA for MADS box protein MdMADS8 TTGGAACCTGAGGTTATTGACCCAAAAGAAAAATCAGGATTGGAACCTGAGGTTAAGAAGATAAGCCATC ACTCAAGAGACAGAACTACAAGACAATCAGCTCTAATCTTTCTCTCTCTTCCACTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTAGGGTTTTCCAACTGAGTGAGTATCTAACTTTC TCTTGTGTTTCACAAATTTGGTTACAGTTTGGTACTGACCTAGAAAAGGAGGATCAGTTTGTACCAAAGA GAGAGAGAAGAACAAGAAAGGGAAAGAAAATATTGTCAAGATCAAAACTTTTGGAGATTAGATACACAAA ATAATATTTTTAGTAACTAAGGACATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAA ACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTCTCCGTTCTCTG TGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTTTGCAGCAGCTCTAGC ATTCTCAAAACACTAGACAGGTACCAAAAATGCAGTTATGGTGCAGTGGATCAAGTTAATAGACCTGCAA AGGAACTTGAGAGCAGCTATCGTGAGTACATGAAACTCAAAGGTAGATATGAGTCCCTACAACGAACTCA GAGAAACCTTCTTGGTGAGGACTTGGGTCCATTAAACACAAAGGAACTTGAGCAGCTTGAGCGTCAACTT GAGGGCTCCTTGAAGCAAGTTAGGTCCACTAAGACCCAGTATATGCTGGACCAACTTTCTGACCTTCAGA ACAAGGAACAACTGTTAATAGAAGCCAACAGGGATTTGACAATGAAGTTGGATGAAATTAGTTCAAGAAA TCAACTTAGACAATCATGGGAAGGTGGTGACCAGGGTATGGCATATGCAACCCAGCATCACCATGCTCAA TCCCAAGGATTCTTCCAGCCTTTAGATTGCAATCCCACTTTGCAAATGGGGTACTCTGCAGTGGGGTCAG AGCAGATGAGTGCTACAACTAATGCCCAGCAAGTGAACTGTTTCATCCCTGGATGGATGCTTTGAGCATG TGCTGATGAATCTGATCAGTGCCTCTAATCACTCATAAGAAAGCATGCCCAATTATGCTTTTTTTTTCCT GGCAATATTATATAAAATGCATGTAACTTATTTTCACATAAACTCAGCAGTGACTGAATTTCAAGGGGAC CTTTCAAAGGCCTAAAGTCCTTTTAGAACTC | |||||
User's notes | |||||
LucaG (luca.gianfranceschi@unimi.it) Date 10 February 2006 - Time: 18:54 Title: Malus domestica mRNA for MADS box protein MdMADS8. Cultivar: Granny Smith Developmental stage: flower, fruit This sequence was assembled into contig View sequence information at PlantGDB | |||||
Allele size and gel image | |||||
Cultivar | Allele size | ||||
Fiesta Discovery Gala Florina Nova Easygro TN10-8 Durello di Forli Prima Modial Gala Fuji |
169:191 191 189 169:187 169:187 183 191 189 |
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