Select a marker

AJ251116-SSR
Primer features
Name Sequence Length Tm  
AJ251116-SSR.F GATCAGAAAATTGCTAGGAAAAGG 24 nt 60.1 °C Primer Stats
AJ251116-SSR.R AGAGAACGGTGAGCTCCTGA 20 nt 60.5 °C
SSR info
SSR repeat type Perfect
Locus type single locus
Detected loci
Alleles size range 165-167
Number of alleles detected 2
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Fiesta-2
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks clean, compl. band(s)
Sequence
>gi|16973293|emb|AJ251116.1|MDO251116 Malus domestica mRNA for B-type MADS box protein (mads13 gene) ATATATCAAGTAAAACAAGATCAGAAAATTGCTAGGAAAAGGTAAGAAATTTGAGAGAGAGAGAGAAATT ATGGGTCGTGGGAAGATTGAAATCAAGCTGATCGAAAACCAGACCAACAGGCAGGTGACCTACTCCAAGA GAAGAAATGGGATCTTCAAGAAGGCTCAGGAGCTCACCGTTCTCTGTGATGCCAAGGTCTCCCTCATTAT GCTCTCCAACACTAATAAAATGCACGAGTATATCAGCCCTACCACTACGACCAAGAGTATGTATGATGAC TATCAGAAAACTATGGGGATCGATCTGTGGAGGACACACGAGGAGTCGATGAAAGACACCTTGTGGAAGT TGAAAGAGATCAACAATAAGCTGAGGAGAGAGATCAGGCAGAGGTTGGGCCATGATCTAAATGGCCTGAG CTTTGACGAGCTGGCTTCTCTTGACGATGAGATGCAGTCTTCCTTGGATGCCATACGTCAAAGGAAGTAC CATGTGATCAAAACTCAGACGGAGACCACCAAGAAGAAGGTTAAGAACTTGGAGCAAAGAAGAGGAAACA TGCTGCATGGCTATTTTGACCAGGAAGCAGCCGGCGAGGATCCACAGTATGGTTATGAGGACAATGAGGG AGACTACGAATCTGCACTTGCATTGTCAAATGGGGCGAATAACTTGTACACTTTCCACCTCCACCACCGT AACCTCCACCACGGAGGAAGTTCGCTCGGCTCCTCCATTACTCATCTGCACGATCTCCGCCTTGCTTGAT CGTGATCTGAGATATGATTAATCATCACTAAGTTATATATTAAGGTCACTTATAACTGCTTTTGTTCTAA AGTGTTTGCTTGGTGACTATCTTTAGGCAAGGAGTTAGACTTGGACTACCTCTGAAAACAGATGCATAAA TATGTGTGTGGTGTTTTAATCAATGATAGCACTAAAAAAATCCGCGCCCTTGTTGCTTGTGGGTTTGTTT GTATAATTAATACTTCTATTCTATATATATCATGGCAGACATTGCTTTTGATATTTTGGTTTGTTTGTCT TGGATGTCTTGTATTGGCTTTAGGGACTTGTTTGGAAAAGACAATAACTGCC
User's notes
LucaG (luca.gianfranceschi@unimi.it)
Date 10 February 2006 - Time: 19:05
Title: Malus domestica mRNA for B-type MADS box protein (mads13 gene).
Tissue: vegetative growing point
This sequence was assembled into contig
PlantGDB link


Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
165:167
167
167
167
167
167

nd

nd


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