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CN444542-SSR
Primer features
Name Sequence Length Tm  
CN444542-SSR.F ATAAGCCAGGCCACCAAATC 20 nt 58.4 °C Primer Stats
CN444542-SSR.R GTTTGCAGTGGATTGATGTTCC 22 nt 60.3 °C
SSR info
SSR repeat type Perfect
Locus type presumed multi-locus
Detected loci
Alleles size range 110-156
Number of alleles detected 8
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-9 Fiesta-9 91.136 B6-77-9 Fiesta x Totem-9 PI 613988-9 Royal Gala-9 Apple Integrated Map-9 M.27 x M.116-9 M.27 x M.116-13
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks clean - Possibly the same locus as NZmsCN444542
Sequence
>gi|46423806|gb|CN444542.1|CN444542 Mdfw2003g22.x1 Mdfw Malus x domestica cDNA clone Mdfw2003g22 3' similar to TR:Q9SSL1 Q9SSL1 F15H11.6 PROTEIN. ;, mRNA sequence CCGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACTCATAAAAACCGATCACTCCATTTCACAT CTTTATGAACAAAAGAATTGAATAAGCCAGGCCACCAAATCCAACTGTATACATGGAGAGAGAAANANAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAATTGCAATCTACAATCTACAGACCCCTAAAAC TAGGAACATCAATCCACTGCAACTGGAGTTCAACCTCCCCACACTCCACATTTCTGAATCGGAAGATCAT GTTTTGAACGAGTTTGCCGTTGGACCAAATAATGCAGCTCTCTTCAACAAGGCAATTTTCCCTGCTTGGT TGTACTTTTGTAAATACGGTTCCATCTGGTAAACCTGCCAATTGCATCCTCAAGACTTTGATAAATAGTG CAATATCAAACTCTGCGTCCCCCATTTTGTCATCAAAACTAAATGTATCTTTATCGTACACAAAAAGCGT GATCGGAAGATTTGGTTCTGTAACAGAAAGTGTCAATCTTTCATCCCATTCTGGATTCACATTCCTCTTC ACTACAAAAGTTTTCAGTTTCTGCTTGCCCATTTTAACAACAACAAAAGGATCACTGCT
User's notes
LucaG (luca.gianfranceschi@unimi.it)
Date 13 February 2006 - Time: 10:11

Sequence
Title:
Mdfw2003g22.x1 Mdfw Malus x domestica cDNA clone Mdfw2003g22 3' similar to TR:Q9SSL1 Q9SSL1 F15H11.6 PROTEIN. ;, mRNA sequence.
Type: mRNA
Length: 619 bp
Organism: Malus x domestica
GenBank Accession: CN444542

Assembly
This sequence was assembled into contig

Library
Name: Mdfw
Cultivar: GoldRush
Tissue:Flower

View Sequence Info at PlantGDB



Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
110:136:146
110:128:136:156
110:136:146
110:124:136
110:124:136
110:126:146

110:136

110:124:136


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