CN444636-SSR
| Primer features | |||||
| Name | Sequence | Length | Tm | ||
| CN444636-SSR.F | CACCACTTGAGTAATCGTAAGAGC | 24 nt | 63.5 °C |  |
|
| CN444636-SSR.R | GTTTGCCAGTTAAGGACCACAAGG | 24 nt | 65.2 °C | ||
| SSR info | |||||
| SSR repeat type | Compound | ||||
| Locus type | single locus | ||||
| Detected loci | |||||
| Alleles size range | 239-243 | ||||
| Number of alleles detected | 3 | ||||
| Expected heterozygosity | n.d. | ||||
| PCR annealing temp | 60 | ||||
| Sequenced allele size | 0 | ||||
| Linkage group(s) | |||||
| Developed by | HiDRAS consortium | ||||
| Other maps | Discovery-2 | ||||
| Reference publication | Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224 | ||||
| Remarks | clean | ||||
| Sequence | |||||
| >gi|46423900|gb|CN444636.1|CN444636 Mdfw2003l01.x1 Mdfw Malus x domestica cDNA clone Mdfw2003l01 3' similar to TR:O81077 O81077 PUTATIVE CYTOCHROME P450. ;, mRNA sequence CCGATTTTTTTTTTTTTTTTTTTGAGAGAGAGAGAGATTTTTTTTTACTCTATTTTTTGTTTACAATAAA AGGGAAATGAATGAGAATGATTCGTTTCCCCACACATTATCACCACTTGAGTAATCGTAAGAGCTTACAT TTATGTATTTTTGTTGGACTCTCTCTGTGAAGTGGTAGACACTTCAGAAAACAGAATGGCTATATATAAA GAAATATATATATATATATATATTCACTGAGGTAACAAGATGATCAGTTATCACCACTAAATGCATGTAT ACATATACTCCATCAGTTTTTCATTTCCTCCCTGCTAGCCTGGCCTTGTGGTCCTTAACTGGCTTGAATC CTTCCAAAACTTGGCTGGAANTCCTTGCTGAGGTATTGGAAATGGGTCGTAATGAACCCCCCCACTCAAC CTCACCACTTCCCATCTAAACTTGTTAACAAGATGGTGGATGAAAATAAACATCTCCAGCTTGGCAACTT CATTTCCTGGAAAAATATGAAAGCCGTTATCTCCTGGAAAGAATGT | |||||
| User's notes | |||||
| LucaG (luca.gianfranceschi@unimi.it) Date 13 February 2006 - Time: 10:14 Sequence Assembly Library View Sequence Info at PlantGDB | |||||
| Allele size and gel image | |||||
| Cultivar | Allele size |  | |||
|
Fiesta Discovery Gala Florina Nova Easygro TN10-8 Durello di Forli Prima Modial Gala Fuji |
241 239:243 241 nd nd 239:241 239:241 239 |
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