CN444794-SSR
Primer features | |||||
Name | Sequence | Length | Tm | ||
CN444794-SSR.F | CATGGCAGGTGCTAAACTTG | 20 nt | 58.4 °C | ||
CN444794-SSR.R | GTTTGCAACTCACACAATGCAAC | 23 nt | 61.1 °C | ||
SSR info | |||||
SSR repeat type | Perfect | ||||
Locus type | presumed multi-locus | ||||
Detected loci | |||||
Alleles size range | 230-306 | ||||
Number of alleles detected | 8 | ||||
Expected heterozygosity | n.d. | ||||
PCR annealing temp | 60 | ||||
Sequenced allele size | 0 | ||||
Linkage group(s) | |||||
Developed by | HiDRAS consortium | ||||
Other maps | Discovery-7 Fiesta-7 Fiesta x Totem-7 Malling9-7 Robusta5-7 Apple Integrated Map-7 M.27 x M.116-7 | ||||
Reference publication | Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224 | ||||
Remarks | extra bands | ||||
Sequence | |||||
>gi|46424058|gb|CN444794.1|CN444794 Mdfw2001i05.y1 Mdfw Malus x domestica cDNA clone Mdfw2001i05 5', mRNA sequence TCTAGCGCTTTTTGTGATGTAGTGTTGTGAAGATTGTGACGGAGCAAATACTTTCGTGGCCCATGGCAGG TGCTAAACTTGATAATTGTGGATAATGGTCCGAATACAACAGATTTGGGTATGAAAATTTGAATATATAT TGGATATGGAAAAGACTGAATATTATTTGGTTATGGCTTTGAATATGGTTATAGGGATTCCCGATTTGTA TCCGTCCCCGAATCCAATCCAAATAATATATATATATATATATTTAGTATTCCCGAATCCATTACCTTGA GAATACAAAAGTTGCATTGTGTGAGTTGCATTTTGTGGGATGTTCAAAGTTTTGAATTAAAATCAGTGAG AATTCAATGGTACTAAACCAACATCATCAATGTTTTAAATTCAATACTTTAGTTTTTATACTCCCCAAGA TCCGTTCATTGAA | |||||
User's notes | |||||
LucaG (luca.gianfranceschi@unimi.it) Date 13 February 2006 - Time: 10:18 Sequence Assembly Library View Sequence Info at PlantGDB | |||||
Allele size and gel image | |||||
Cultivar | Allele size | ||||
Fiesta Discovery Gala Florina Nova Easygro TN10-8 Durello di Forli Prima Modial Gala Fuji |
260:306 230:298 254:270 270 260 230 256:272 256 |
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