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CN445599-SSR
Primer features
Name Sequence Length Tm  
CN445599-SSR.F TCAAATGGGTTCGATCTTCAC 21 nt 57.4 °C Primer Stats
CN445599-SSR.R GTTTGCCTGGCTGTAACTGTTTGG 24 nt 65.2 °C
SSR info
SSR repeat type Perfect
Locus type presumed multi-locus
Detected loci
Alleles size range 130-176
Number of alleles detected 10
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-5 Fiesta-5 Robusta5-5
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks extra bands
Sequence
>gi|46424863|gb|CN445599.1|CN445599 Mdfw2003f11.y1 Mdfw Malus x domestica cDNA clone Mdfw2003f11 5' similar to TR:O81062 O81062 T18E12.21 PROTEIN. ;, mRNA sequence TTTTCTCAAAATCTCTTCTCTCCGATCCGTACGGAAGGAGACCGTTTGAAAATCTTCTGCATCGCGGCCC ACTGGGTTTTGAGGAGGAGGCCCAATTCAGTTCGATTTGATCGGAATTGTTGTTCGAAGCGGTTTCTTTT CGAGTGATTACATTAACGATGAAGAACGTTGAGCGTATTGCCAATATCGCCTTAGCAGGTTTAACGTTAG CACCACTTGTTGTAAAGGTAGATCCAAACCTAAATGTAGTTTTGACTGCATGTCTCACAGTTTTCGTGGG TTGCTACCGGTCTGTGAAGCCAACTCCACCTTCAGAGACGATGTCCAATGAACATGCCATGCGTTTCCCG TTTGTCGGGAGTGCAATGCTGTTATCACTATTTTTACTTTTTAAGTTCTTATCCAAAAACTTGGTTAATG CTGTCTTGACGTGCTATTTCTTTGTTCATGGGATAATTGCTCTT
User's notes
LucaG (luca.gianfranceschi@unimi.it)
Date 13 February 2006 - Time: 10:22

Sequence
Title:
Mdfw2003f11.y1 Mdfw Malus x domestica cDNA clone Mdfw2003f11 5' similar to TR:O81062 O81062 T18E12.21 PROTEIN. ;, mRNA sequence.
Type: mRNA
Length: 464 bp
Organism: Malus x domestica
GenBank Accession: CN445599

Assembly
This sequence was assembled into contig

Library
Name: Mdfw
Cultivar: GoldRush
Tissue:Flower

View Sequence Info at PlantGDB



Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
131:154:164
130:132:152:176
130:132:146:154
130:146:176
131:136
131:132:150:154

131:136:154

130:131:146


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