Select a marker

Hi02d05
Primer features
Name Sequence Length Tm  
Hi02d05.F GAGGGAGAATCGGTGCATAG 20 nt 60.5 °C Primer Stats
Hi02d05.R CATCCCTCAGACCCTCATTG 20 nt 60.5 °C
SSR info
SSR repeat type Perfect
Locus type single locus
Detected loci
Alleles size range 153-205
Number of alleles detected 7
Expected heterozygosity n.d.
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by HiDRAS consortium
Other maps Discovery-12 Fiesta-12
Reference publication Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224
Remarks extra bands
Sequence
>Hi02D05 ATATTTGAGAACAAACCAACTTGCAACTTCCACCCCATTTCCTCTTTATAATTCAGCTGC CAATAGGAATCAGATTACCAAGATTGATAATTATAGTGTAAAAAGACTCATCCTTCTGAA TACAAAGCAAATGAAAATCACATATCCGCAAAAAGTTCTACACATTGATGAGAAGAACAT GTTCAGAGGGTAGAATCACTAAAATTTCTAATACTATCGTTCAACCATTACATATCTTCT ACCTCCATATCAGTTCCAAGTGCTAAATTTCACAAACCCTAATCTAGATTTCACAAACCC TAATCTAAATTTCACAAACCCTAAATTAATTCCAAAATTTACTTGATTTGAGGGAGAATC GGTGCATAGTGCACTGAAAACTGGATGAAGAAGTAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGAGAGGTGAGTGGCGTGGGCTG TGGCTTTGCCTATGTGCTGNGAAGGAAGGCTCCTCCACAATGAGGGTCTGAGGGATGAGA AGTCGGCGATGAGCCAGATCTGAAACATTCACTAGTGAATTCGCGGCCGNCTGCAGGTCG ACCATATGGGAGAGCTCCCAACGCGTTGGATGCNTAGCTTGAGTATTCTATAGTGNCCCT AAATAGCNNGGCCGTANTCATGGCCTNGCTGTTTCCTGTGTGAAATCGTTATCCCGNTCA CANG
User's notes
THERE ARE NO USER'S NOTES.
Allele size and gel image
Cultivar Allele size
Fiesta
Discovery
Gala
Florina
Nova Easygro
TN10-8
Durello di Forli
Prima
Modial Gala
Fuji
 		153:197
153:205
153:191
153:205
153:175
153:175

153:175

195:205

admin Send comments to Luca Gianfranceschi