Select a marker

IPPN05
Primer features
Name Sequence Length Tm  
IPPN05.F GACCTTCCCCTTCCTCAACT 20 nt 60.5 °C Primer Stats
IPPN05.R (GTTTCTT)CGAATTCCTCGTTCCTGAAA 29 nt 66.2 °C
SSR info
SSR repeat type unknown
Locus type
Detected loci
Alleles size range 232-257
Number of alleles detected 0
Expected heterozygosity 0.57
PCR annealing temp 60
Sequenced allele size 0
Linkage group(s)
Developed by College of Agriculture, Ibaraki University, Ibaraki, Japan
Other maps Fiesta x Totem-15 M.27 x M.116-15
Reference publication Inoue E., Matsuki Y., Anzai H., Evans K.M. (2007) Isolation and characterization of microsatellite markers in Japanese pear (Pyrus pyrifolia Nakai). Molecular Ecology Notes 7(3): 445-447
Remarks SSR marker developed in pear
Sequence
>gi|125995312|dbj|AB250788.1| Pyrus pyrifolia DNA, microsatellite locus IPPN005 ACTTCCTCATGGGATATGGTTTATACAGGCCTTCTCAGTCCAGTGTCAGCCCAAGAAGCCCCTTGAGTCC GTCCTGCATTGCACCTGAGCTTCTTTCACCAGAAAGCATGGGCTTGAAGTTGAAACCGATAAAAACTCGA ATTCCTCGTTCCTGAAAGGAGTTGAAAAAAGGGTTTGCGAAAAACGCTTCTTTTCTGTGAGTTTTAGATT TCACTTAGATTTTGGGGGTTGAAAAAAGGGAAGGGGATTAGCGGTTCTGTAGATATCTAGAGCGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACAGGGGATAATATCCAGATATAATTCTTTCATTTG TAATCACAACTGTTAGTTGAGGAAGGGGAAGGTCTAGTTTTCTGTATATCGTCGAAATAAACATTTA
User's notes
THERE ARE NO USER'S NOTES.
Allele size and gel image
Cultivar Allele size
Not available


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