Select a marker == Select a marker == AF057134-SSR AF527800-SSR AJ000761-SSR AJ001681-SSR AJ251116-SSR AJ320188-SSR AT000174-SSR AT000400-SSR AT000420-SSR AU223486-SSR AU223548-SSR AU223657-SSR AU223670-SSR AU301431-SSR AY187627-SSR BPPCT028 C10052 C10107 C1014 C10190 C10226 C1032 C10455 C10457 C10534 C10538 C1068 C10703 C10741 C10863 C110 C11014 C11146 C11347 C11387 C11588 C11753 C11796 C11800 C11819 C11847 C11919 C11961 C11977 C12017 C12047 C12059 C12063 C12199 C12242 C12301 C12343 C12349 C12360 C12371 C12417 C12427 C12505 C12584 C12595 C12635 C12798 C12799 C1289 C129 C13082 C13131 C13146 C1315 C13174 C13243 C13280 C1337 C13383 C13393 C13442 C13449 C13470 C13480 C13492 C13508 C1352 C136 C13610 C1374 C13776 C13810 C13877 C14087 C14133 C143 C14411 C14438 C14448 C14493 C15 C1554 C1582 C16216 C1622 C163 C1663 C16674 C16757 C1695 C170 C1755 C17597 C17637 C17736 C18032 C1824 C18630 C18632 C1899 C1902 C19411 C1953 C19758 C2003 C20209 C204 C2070 C21057 C2138 C2192 C22120 C22253 C22429 C2268 C2275 C2288 C23106 C23178 C2443 C2444 C2451 C2476 C2532 C2608 C2614 C2624 C2630 C2702 C2811 C3057 C306 C3655 C3656 C3740 C3773 C3807 C3824 C3843 C4065 C4241 C4299 C4308 C4359 C4406 C4467 C4504 C4576 C4621 C4642 C4718 C4760 C4766 C4772 C482 C4837 C4864 C4909 C4925 C4935 C4985 C5039 C509 C5206 C526 C53 C552 C5534 C590 C6159 C623 C6359 C6474 C6554 C6799 C6948 C7498 C7524 C7536 C7542 C776 C7860 C793 C8201 C8263 C837 C8892 C894 C9289 C9312 C9332 C9334 C9350 C9362 C9402 C9455 C9457 C9475 C9553 C9693 C9751 C9835 C9856 C9927 CH-Vf1 CH-Vf2 CH01a07b CH01a09 CH01b07 CH01b09b CH01b11 CH01b12 CH01c06 CH01c08 CH01c09 CH01c11 CH01d01 CH01d03 CH01d07 CH01d08 CH01d09 CH01e01 CH01e09b CH01e12 CH01f02 CH01f03a CH01f03b CH01f07a CH01f09 CH01f12 CH01g05 CH01g12 CH01h01 CH01h02 CH01h10 CH01h11 CH02a03 CH02a04 CH02a08 CH02a10 CH02b03b CH02b07 CH02b10 CH02b11 CH02b12 CH02c02a CH02c02b CH02c06 CH02c09 CH02c11 CH02d08 CH02d10a CH02d10b CH02d11 CH02d12 CH02e02 CH02e12 CH02f06 CH02g01 CH02g04 CH02g09 CH02h07 CH02h11a CH03a02 CH03a03 CH03a04 CH03a08 CH03a09 CH03b01 CH03b06 CH03b10 CH03c01 CH03c02 CH03d01 CH03d02 CH03d07 CH03d08 CH03d10 CH03d11 CH03d12 CH03e03 CH03g04 CH03g06 CH03g07 CH03g12 CH03h03 CH03h06 CH04a06 CH04a12 CH04b10 CH04c03 CH04c06 CH04c07 CH04c10 CH04d02 CH04d07 CH04d08 CH04d10 CH04d11 CH04e02 CH04e03 CH04e05 CH04e12 CH04f03 CH04f04 CH04f06 CH04f07 CH04f08 CH04f10 CH04g04 CH04g07 CH04g09 CH04g10 CH04g12 CH04h02 CH05a02 CH05a03 CH05a04 CH05a05 CH05a09 CH05b06 CH05c02 CH05c04 CH05c06 CH05c07 CH05d02 CH05d03 CH05d04 CH05d08 CH05d11 CH05e03 CH05e04 CH05e05 CH05e06 CH05f04 CH05f06 CH05g01 CH05g02 CH05g03 CH05g05 CH05g07 CH05g08 CH05g11 CH05h05 CH05h12 CN444542-SSR CN444636-SSR CN444794-SSR CN445290-SSR CN445599-SSR CN491050-SSR CN493139-SSR CN496002-SSR CN496913-SSR CN581493-SSR COL EMPc10 EMPc104 EMPc105 EMPc11 EMPc111 EMPc115 EMPc117 EMPc119 EMPc12 GD100 GD103 GD112 GD12 GD126 GD127 GD136 GD142 GD144 GD147 GD15 GD153 GD154 GD158 GD161 GD162 GD6 GD96 HGA8b Hi01a03 Hi01a08 Hi01b01 Hi01c04 Hi01c06 Hi01c09 Hi01c11 Hi01d01 Hi01d05 Hi01d06 Hi01e10 Hi02a03 Hi02a07 Hi02a09 Hi02b07 Hi02b10 Hi02c06 Hi02c07 Hi02d02 Hi02d04 Hi02d05 Hi02d11 Hi02f06 Hi02f12 Hi02g06 Hi02h08 Hi03a03 Hi03a06 Hi03a10 Hi03b03 Hi03c04 Hi03c05 Hi03d06 Hi03e03 Hi03e04 Hi03f06 Hi03g06 Hi04a02 Hi04a05 Hi04a08 Hi04b12 Hi04c05 Hi04c10 Hi04d02 Hi04d10 Hi04e04 Hi04e05 Hi04f08 Hi04f09 Hi04g05 Hi04g11 Hi05b02 Hi05b09 Hi05c06 Hi05d10 Hi05e07 Hi05f12 Hi05g12 Hi06b06 Hi06f09 Hi07b02 Hi07b06 Hi07d08 Hi07d11 Hi07d12 Hi07e08 Hi07f01 Hi07g10 Hi07h02 Hi08a04 Hi08c05 Hi08d09 Hi08e04 Hi08e06 Hi08f05 Hi08f06 Hi08f12 Hi08g03 Hi08g06 Hi08g12 Hi08h03 Hi08h08 Hi08h12 Hi09a01 Hi09b04 Hi09f01 Hi11a01 Hi11a03 Hi12a02 Hi12c02 Hi12f04 Hi15a13 Hi15b02 Hi15c07 Hi15e04 Hi15g11 Hi15h12 Hi16d02 Hi20b03 Hi21c08 Hi21e04 Hi21f08 Hi21g05 Hi22a07 Hi22d06 Hi22f04 Hi22f06 Hi22f12 Hi22g06 Hi23b12 Hi23d02 Hi23d06 Hi23d11 Hi23g02 Hi23g08 Hi23g12 Hi24f04 IPPN02 IPPN05 IPPN14 IPPN15 IPPN18 IPPN19 KA4b MDAJ761-SSR MdBHLH3 MdMYB12 MdMYB17 MdMYB9 MS01a03 MS01a05 MS02a01 MS06c09 MS06g03 MS14b04 MS14h03 MSS10 MSS16 MSS4 MSS5 MSS6 NB102a NH005b NH007b NH008b NH009b NH011b NH015a NH029a NH033b NZ01a6 NZ01d12 NZ01d7 NZ02b1 NZ03c1 NZ04f3 NZ04h11 NZ05g8 NZ17e6 NZ22c6 NZ23f1 NZ23g4 NZ26c6 NZ28f4 NZmsAB052994 NZmsCN862923 NZmsCN878021 NZmsCN879773 NZmsCN892357 NZmsCN895337 NZmsCN898349 NZmsCN899300 NZmsCN900668 NZmsCN909188 NZmsCN914822 NZmsCN943067 NZmsCN943818 NZmsCN943946 NZmsCO754252 NZmsCO905522 NZmsCV880267 NZmsDR033893 NZmsDR999337 NZmsEB106592 NZmsEB106753 NZmsEB107305 NZmsEB111793 NZmsEB116209 NZmsEB117266 NZmsEB119405 NZmsEB132582 NZmsEB132749 NZmsEB134379 NZmsEB134400 NZmsEB135714 NZmsEB137525 NZmsEB137749 NZmsEB137770 NZmsEB142980 NZmsEB145764 NZmsEB146613 NZmsEB147493a NZmsEB147967 NZmsEB149808 NZmsEB153909 NZmsEB153947 NZmsEB155242 NZmsEB157320 NZmsEB177006 NZmsEB177464 NZmsEE663789 NZmsEE663955 NZmsMDAJ1681 NZmsPal13 NZmsPal213rd NZmsPal36 NZmsPal443ird NZmsPal45 NZmsPal51 NZmsPal8 NZmsPal92 SAmsCN444745 SAmsCN488792 SAmsCN492626 SAmsCN492903 SAmsCN493171 SAmsCN850743 SAmsCN904905 SAmsCN907678 SAmsCN909118 SAmsCN910199 SAmsCN917681 SAmsCN925672 SAmsCO417416 SAmsCO723438 SAmsCO755162 SAmsCO865954 SAmsCO865955 SAmsCO900737 SAmsCO903145 SAmsCO903298 SAmsCO903797 SAmsCV150384 SAmsDR990622 SAmsDR996674 SAmsDR996840 SAmsEB116729 SAmsEB124615 SAmsEB134278 SAmsEB138859 SAmsEB144676 SAmsEB147667 SAmsEB149428 SAmsEB149589 SAmsGO522086 SAmsGO566418 SdSSR U50187-SSR U78948-SSR U78949-SSR UDP96-019 UDP98-416 Z38126-SSR Z71980-SSR Z71981-SSR

IPPN18

Primer features
Name	Sequence	Length	Tm
IPPN18.F	CACCCCCTTCATGATTGC	18 nt	56.1 °C
IPPN18.R	(GTTTCTT)TTTCTGGTTAGTGGGGGTTT	29 nt	66.2 °C
SSR info
SSR repeat type	unknown
Locus type
Detected loci
Alleles size range	294-343
Number of alleles detected	0
Expected heterozygosity	0.36
PCR annealing temp	60
Sequenced allele size	0
Linkage group(s)
Developed by	College of Agriculture, Ibaraki University, Ibaraki, Japan
Other maps	Fiesta x Totem-6 M.27 x M.116-6
Reference publication	Inoue E., Matsuki Y., Anzai H., Evans K.M. (2007) Isolation and characterization of microsatellite markers in Japanese pear (Pyrus pyrifolia Nakai). Molecular Ecology Notes 7(3): 445-447
Remarks	SSR marker developed in pear
Sequence
>gi|125995321|dbj|AB250797.1| Pyrus pyrifolia DNA, microsatellite locus IPPN018 ACTCGATTATAGTTGAGAACTGAGGTTGCATGTGATGTTAGTAGTTTGAGAATTTCTATGGGCCTCCAAA AGTTCCTCAGTTTCACCCCCTTCATGATTGCCTCTCTCTCTCTCTCTCTCTCTGTGTCTCTCTCCGGCAG TAAGTTGATTCCAGAAAACAGTGAGAGAGAGAGATTGAGATTTTTTTGCTCAAAGCTTCTCCTAGATGAC AAAGAACCCATCCCTTCAATTCTAAAGTGGTCCTCCTTTCTCGACTGATAACTTGACAACCTCTCTCCTT ATCCTACACACACCTTCTCTCTTCTGTTCCCTACCCCTCTAATCCTATGCACCCTCTCTCTCTCTCTCTC TCTCTCTCTCAAACCCCCACTAACCAGAAAGAAAAGTGAATCCAACTCCTCACCATTTTCACCATTTTCC CATTCTCTAGCTACACCAAGAGCTAGCTTCTTCAACAAACCCTAGTTCTCAAAACCCTAATTCTCCAAAC GTAAAAAGCCATGTCGAGTTCTAGCGTTTGGAACAAAGAAGAAGACAAAGAGTTCGAGAACGCAATTGCC ATGCATTGGATCGATGAAAACTCGAAAGAAATGTGGGAAAAGATTGCTGAGTTGGTTCCAAGCAAGAGCA TGGGAGAGTTGAAGCAGCACTACCAAATGCTAGTCGACGATGTGGGTGCAATTGAGGCGGGGCGCGTGTC ACCGCCTAACTACGCAGCTGATGAAGCTGCTAATACACTATCGTCTAGTAAAGACAGTGGTCATCGTGCT TCTTCTTCCGGTGCTTCGGCTTCGGAAAAGAGATTAAACTGCGGTCGCGGAGGTGGGTTTTCAGGTTTAG GTCATGACTCCACGGGCCATGGCGGTAAGGGAGGGTCGAGGGCGGACCAAGAGAGGAAGAAAGGGATTCC GTGGACTGAAGAAGAGCATAGGT Display PCR primer position Blast against NCBI nr database
User's notes
THERE ARE NO USER'S NOTES.
Allele size and gel image
Cultivar	Allele size
Not available

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