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MS02a01
Primer features
Name Sequence Length Tm  
MS02a01.F CTCCTACATTGACATTGCAT 20 nt 54.3 °C Primer Stats
MS02a01.R TAGACATTTGATGAGACTG 19 nt 50.9 °C
SSR info
SSR repeat type imperfect
Locus type single locus
Detected loci
Alleles size range 170-194
Number of alleles detected 6
Expected heterozygosity 0.79
PCR annealing temp 56
Sequenced allele size 200
Linkage group(s)
Developed by Warwick HRI
Other maps Fiesta-10 Prima-10 Discovery-10 Fiesta-10 Fiesta-10 Fiesta x Totem-10 Apple Integrated Map-10 M.27 x M.116-10
Reference publication Liebhard, R. Gianfranceschi, L. Koller, B. Ryder, C. D. Tarchini, R. Weg, E. van de Gessler, C. (2002) Development and characterization of 140 new microsatellites in apple (Malus x domestica Borkh.). Molecular Breeding 10(4): 217-241
Remarks
Sequence
>gi|58003349|gb|AY861470.1| Malus x domestica clone MS02A01 microsatellite sequence CAGCTGTGCATCAAATATATAATGTATATGCAGGTCTTCTCCTACATTGACATTGCATTCTCAAAGTTCC TTATAACGTNTATACATACATACATACATACATACATACATACATACATACACACCTACACACACACACA CACACACACACACACACACACACACACACATTCAAAACTAGTCTTGCAAAAGATAGCTAGCTAGCACAAA ATTCCCAGTCTCATCAAATGTTTATATGCCATGATTTGTGCAAGCCAAGCATGTATGGTATGTCCGCAAG ATTTTGTCTANAAGCTTAATAGCAGAACATGTATCTGGACAAATTTTAAAGTTTGTGCAAGTCAGTCCAC GCGTGGACTAACCTGTGAGTGGGTCTTATCATTGTCACGTATATGTGTGTGCGTGTGTGTGTGTGTGTGT GANCTCCCCGACAATGCCTTTANTACTAANAGTGGCATGTCATGTNTAGCTTNACAAATANACTTTTCGT ATACTTTATGTTTNTAANATNATTGTGANCATAAATTGTGGCACGANATACTTGTGTTTTATCTGCTATC ATCGCATGTTGGCACGGTGTCCTTAATTATT
User's notes
LucaG (luca.gianfranceschi@unimi.it)
Date 13 February 2006 - Time: 15:02
Sequence
Title:
Malus x domestica clone MS02A01 microsatellite sequence.
Type: DNA
Length: 591 bp
Organism: Malus x domestica
GenBank Accession: AY861470

Cultivar: Fiesta syn. Red Pippin

View Sequence Info at PlantGDB



Allele size and gel image
Cultivar Allele size
Not available


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