MSS16
Primer features | |||||
Name | Sequence | Length | Tm | ||
MSS16.F | CTCCCCTTGTGTGATGCC | 18 nt | 58.4 °C | ||
MSS16.R | TTGCCCTCAAAGAATGCC | 18 nt | 53.8 °C | ||
SSR info | |||||
SSR repeat type | unknown | ||||
Locus type | |||||
Detected loci | |||||
Alleles size range | 154-210 | ||||
Number of alleles detected | 18 | ||||
Expected heterozygosity | 0.92 | ||||
PCR annealing temp | 57 | ||||
Sequenced allele size | 186 | ||||
Linkage group(s) | |||||
Developed by | CGAF, ONF, Campus INRA, Ardon, France, | ||||
Other maps | Fiesta x Totem-17 PI 613988-17 Royal Gala-17 | ||||
Reference publication | Oddou-Muratorio, S; Aligon, C; Decroocq, S; Plomion, C; Lamant, T; Mush-Demesure, B (2001) Microsatellite primers for Sorbus torminalis and related species. Molecular Ecology Notes 1(4): 297-299 | ||||
Remarks | SSR marker developed in Sorbus torminalis | ||||
Sequence | |||||
>gi|20067410|emb|AJ313043.1| Sorbus torminalis microsatellite DNA, clone 144 GCAAGCAATTTGTGACACAAACCCACATGGGATATTTTTATACGGTCTATATAGACACTGACCCAAGGCA GCAGATTCTCTTCCTATGTCACATCTCTCCCCTTGTGTGATGCCAACACTTAACTACCAACCCATGAATA TTTCTATACTCTATACTTTTAACAAAAGATATCGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCATAACTTTTGTATNTGCTTTATNTGCTAAGGCATTCTTTGAGGGC AAAATCNCTCTCATTAGATTCTTGCNCTAATGCAATGACCCCCTCNCCCCCAACACNCACACACACACAC ACAAAGGACCCAAAAGGAAGAAATTGTAAGACTAGCATTTGTTAGCATCTGCATTGCCTTTAGCTTGTTA AAATTGAGTGGTTGAACAAAAGGAGAGATGCCCACTGCCTCCAATCTCTCATCTCTCATATCTCTTTGGC TTATTAATTTAAACTGCATTGGGGGTTACTCAAATCATGCTCAACTACCACCTTAGCTATATATTATAGT GAGCATATAATGGTAGATTATGAACAAGAGTCACATGGAGAGATCTAAACTTTTAGGACCATTGTTGCTA GGAAGAGCTTTTTGTGCAATAGGGTAGTGT | |||||
User's notes | |||||
THERE ARE NO USER'S NOTES. | |||||
Allele size and gel image | |||||
Cultivar | Allele size | ||||
Not available |
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