U78948-SSR
| Primer features | |||||
| Name | Sequence | Length | Tm | ||
| U78948-SSR.F | GATCGTCCGCCACCTTAAT | 19 nt | 57.3 °C |  |
|
| U78948-SSR.R | AGGGTTTTCATCATGCACATT | 21 nt | 55.5 °C | ||
| SSR info | |||||
| SSR repeat type | Imperfect | ||||
| Locus type | single locus | ||||
| Detected loci | |||||
| Alleles size range | 178-190 | ||||
| Number of alleles detected | 7 | ||||
| Expected heterozygosity | n.d. | ||||
| PCR annealing temp | 60 | ||||
| Sequenced allele size | 0 | ||||
| Linkage group(s) | |||||
| Developed by | HiDRAS consortium | ||||
| Other maps | Discovery-14 Fiesta-14 Apple Integrated Map-14 | ||||
| Reference publication | Silfverberg-Dilworth E, Matasci C L, Van de Weg W E, Van Kaauwen M P W,Walser M, Kodde L P, Soglio V, Gianfranceschi L, Durel C E, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A (2006) Microsatellite markers spanning the apple (Malus x domestica Borkh) genome. Tree Genetics & Genomes 2(4): 202-224 | ||||
| Remarks | extra bands | ||||
| Sequence | |||||
| >gi|3947984|gb|U78948.1|MDU78948 Malus domestica MADS-box protein 2 mRNA, complete cds GTCACTCATATATAGACAGAGAAGGAGAGAGACCAGACCCCTACCTTAGAGAGAGAGAGAGAGCAGAAGC CATCTGTGTGTCAACTGGTTCTTTCTCTCCCATTTTTCTTGGTTTCTTGGTGGGATTTCTGGTTTCTCTA AACTAAGAGATCAGTTCAGCAGGAACAACCGTATATATATTACTAGGATTATTAATTATTTATTTATAAT AATAAATAATTGTTAGAGAGATTATGGGGAGGGGAAGGGTGCAGCTGAAGAGAATTGAGAACAAGATCAA CAGGCAGGTGACCTTCTCAAAGAGAAGGTCGGGGCTGATGAAGAAAGCTCATGAGATTTCTGTGCTTTGT GATGCTGAGGTTGCTTTGATTATCTTCTCCACCAAGGGCAAGCTCTTTGAGTACTCCAATGATTCCTGCA TGGAAAGGATCCTGGAAAGGTACGAAAGATACTCATATACAGAGAGGCAGCTTCTTGCAAATGATAATGA ATCCACTGGAAGCTGGACTCTGGAACATGCAAAGCTCAAGGCTAGGGTGGAGGTTTTACAAAGAAATCAA AGACACTATATGGGAGAAGATCTCCAATCCTTAAGTCTCAAAGAGCTTCAAAATTTAGAGCAACAGCTTG ATTCTGCACTGAAGCACATAAGGTCAAGAAAGAACCAAGTTATGTACGAATCGATTTCTGAGCTCCAGAA GAAGGATAAGGCATTGCAGGAGCAAAACAACTTGCTGGCAAAGAAGGTGAAGGAGAAGGAGAACGCAGTA GCTCAACAGGCCCAATTGGAGCATGTGCAGGAGCAGAGGTTGAACTCCTCTTCCTCCCTTCTTCCACGGG CATTGCAGTCCTTGAATTTCGGCAGCGGGTCCAATTACCAGGCCATTAGATCAAGTGAAGGAATACCAGG AGATAATCAGCAGTATGGAGATGAAACCCCAACTCCACATAGACCTAACATGCTGCTGCCCGCTTGGATC GTCCGCCACCTTAATGAATAGAAGAATTCATCACCATGAAATAATATTATCTCCAAAGGGAATAATATTA TGTGACATCAATTAATCAAGTAAACATATTATACTTATATATATATATATATATATATCTATATATCTAT ACCAAGAAATTAATTGGTAATGTGCATGATGAAAACCCTAGACTCGATCTATCTCTAAATGTGTATCGTA TGTTGGAATTCATTAATATATCTTAAGGGCTTGTTTGGTA | |||||
| User's notes | |||||
| LucaG (luca.gianfranceschi@unimi.it) Date 13 February 2006 - Time: 14:23 Sequence Assembly Library Reference View Sequence Info at PlantGDB | |||||
| Allele size and gel image | |||||
| Cultivar | Allele size |  | |||
|
Fiesta Discovery Gala Florina Nova Easygro TN10-8 Durello di Forli Prima Modial Gala Fuji |
188:190 180:186 178:186 nd 178:182 nd 180:186 nd |
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