Select a marker

CH01e01
Primer features
Name Sequence Length Tm  
CH01e01.F GGTTGGAGGGACCAATCATT 20 nt 58.4 °C Primer Stats
CH01e01.R CCCACTCTCTGTGCCAGATC 20 nt 62.5 °C
SSR info
SSR repeat type Compound
Locus type single locus
Detected loci
Alleles size range 106-120
Number of alleles detected 5
Expected heterozygosity 0.67
PCR annealing temp 60
Sequenced allele size 162
Linkage group(s)
Developed by ETH Zuerich
Other maps Braeburn-1 Telamon-1 Fiesta-14 Fiesta x Totem-14 Apple Integrated Map-14
Reference publication Liebhard, R. Gianfranceschi, L. Koller, B. Ryder, C. D. Tarchini, R. Weg, E. van de Gessler, C. (2002) Development and characterization of 140 new microsatellites in apple (Malus x domestica Borkh.). Molecular Breeding 10(4): 217-241
Remarks none
Sequence
>CH01e01 ggagctccacgcggnggcggccgctctagaactagnggancccccgggctgcaggaantccaantggttggagggaccaa tcattanaaaangananggaaaactctttcgngngngngngngtgngtgngngnaagagagagagagagagagagagaga gagagagagagagagagagagagagagagagagagagaggacacacgatctggcacagagagtggggggagganggnggc gangcnnacncacccccccccgcgngaggggcgggactctngnttatangcncctagagagaaaagggaggggngncnac attngagcccccgngngngngggngngcacccatgngngctctgccacactnccnctnacangtgtctcatgcaccccan acacgnctggccccacncacacactagagacacgcaccccnngctccntntgcccccnncnnctcctccnantggantnc natatcgggctnatcgatacntccacccgngggggggcnnncncccccctccccnctnagtgggtccnntgcacccncgn gccnccnttttcacgncccgncngnggaancccgcctttcccnctttaccccccgnngcctccccccccccggnggnntt naccn
User's notes
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Allele size and gel image
Cultivar Allele size
Prima
Fiesta
Discovery
Durello di Forlí
TN10-8
Florina
Nova Easygro
Starking
112:120
106:110
110

108:110
110
110
108:110


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